Sediminicola sp. YIK13: SB49_01105
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Entry
SB49_01105 CDS
T04145
Name
(GenBank) penicillin-binding protein
KO
K05366
penicillin-binding protein 1A [EC:
2.4.99.28
3.4.16.4
]
Organism
syi
Sediminicola sp. YIK13
Pathway
syi00550
Peptidoglycan biosynthesis
syi01100
Metabolic pathways
syi01501
beta-Lactam resistance
Brite
KEGG Orthology (KO) [BR:
syi00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
SB49_01105
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
SB49_01105
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
syi01003
]
SB49_01105
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
syi01011
]
SB49_01105
Enzymes [BR:
syi01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.99 Transferring other glycosyl groups
2.4.99.28 peptidoglycan glycosyltransferase
SB49_01105
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
SB49_01105
Glycosyltransferases [BR:
syi01003
]
Polysaccharide
Bacterial polysaccharide (excluding LPS)
SB49_01105
Peptidoglycan biosynthesis and degradation proteins [BR:
syi01011
]
Peptidoglycan biosynthesis and degradation
Glycosyltransferase/DD-Transpeptidase (Class A PBP)
SB49_01105
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Transgly
Transpeptidase
PBP_middle
YxiJ
DUF4854
Motif
Other DBs
NCBI-ProteinID:
ALM06561
LinkDB
All DBs
Position
complement(249253..251499)
Genome browser
AA seq
748 aa
AA seq
DB search
MISKPIKNKVLKIVIRITVALALVFILFLLSIYIGAWGKVPTKKDLSEFNYQRASEVYTA
DSVLIGKYYLFDRQPITYNDLPQHLIDALVAIEDERFYGHHGIDYPSLLRVIFKTILLQD
QSAGGGSTLTQQLAKNLYPRVPNGKLRLAVDKVKEMMVASRLEDLYTKEELITLYLNTVS
FGDNTFGIESASLKFFNKKAKDLKVEEAATLVGMLKATYGYNPRVFPENSFNRRNLVLQA
MANNSYLTKTQKDSLSGLPTRLDYRDFDHNDGIAPYFREEVRKQLLQWVKEQNSNGAEYN
IYTSGLKIYTTLDYKMQVLAEEAMTEHMKALQQSFEKSYGSNAPWLKDTKLIQKKIQNSP
VYKSLERNGLSKEQILDSLNKKHTLTLMDWEGEKTLQASSIDSIQHYMKFLNTGSLSIDP
TTGAVKTWIGGVNFKYFKYDHISQSKRQVGSTFKPIVYTAAIEKGIAPCTYFSAQEVAYD
NLEGWSPSNSGKEDETYLNYSMEQALSNSINTVAVKVLEETGIPNVIGQAKKMGITSNLP
HLPSLALGTAEIKINELIGAYASYVNAGKSVTPFAITHIANTKDSILANFQPVIAKQPAF
SKETGMLLLEMMKATVDKGTAARIRSKYNLTNAIAGKTGTTQNNKDAWFVGITPKLVSIT
WVGLDTYEIGFKSTSLGQGANAALPIFALWLQKLNKEKQFNGITQARFENPSPTVLDQLD
CEPIKRDGFFKRLFKNPNKTKKFKNNSN
NT seq
2247 nt
NT seq
+upstream
nt +downstream
nt
ttgatttccaaaccaataaaaaataaggtactgaaaatagtgattcgaattacagtggca
ctggcactggtattcatattgttccttctaagcatctatataggagcatggggaaaagtt
ccaaccaaaaaagacctttcagaatttaattaccaaagggcttcagaggtgtatacggcc
gatagtgtgctcattggaaaatattacttgtttgatcggcaaccgattacgtacaatgac
ctgccccaacacctaatagatgccttggtagccattgaggatgaacgtttctatgggcac
catggaattgactatcccagtttgttgagggttatattcaagaccattctattacaagac
caatcggcaggaggagggagcacccttacccaacaacttgccaagaacctatatccaaga
gtcccaaacggcaaactacgtttggctgtagacaaagtaaaggagatgatggtagcctct
aggctggaagatctttacactaaggaggaattgattaccctttatctaaataccgtttcc
tttggagataatacctttggaattgaaagtgcctccctaaaatttttcaataagaaagcc
aaagacctaaaggtagaagaggctgccaccctggtagggatgctcaaagcaacttacggg
tacaacccaagggtgtttccggaaaacagcttcaatagacgcaacttggtattacaggcc
atggccaacaactcctatctgaccaaaacacaaaaagattctctttctgggcttcccaca
aggttagattatagggattttgaccacaatgatgggatagcgccctatttcagggaggag
gtcaggaaacagctcctgcaatgggtaaaagaacaaaactccaacggggcagaatacaat
atttacacctccggcttgaaaatttacaccaccttggattataaaatgcaggtgttggca
gaagaagctatgacagagcacatgaaggcattacaacagagctttgaaaaaagttatggc
tccaatgcgccatggctaaaagacaccaaactgatccagaaaaaaattcaaaattcccct
gtctataaaagtttagaacggaatgggctaagtaaagaacaaatcttggatagccttaat
aagaaacatacactgacactgatggactgggaaggagaaaagaccctccaagcgagtagc
attgacagtattcaacattatatgaaattccttaataccggatccttgtccatagacccc
actacgggagctgtaaagacttggatcggcggtgtgaatttcaaatattttaagtacgac
catatttcccaaagcaaaagacaggtaggttctacttttaagcccatcgtatatacggct
gccatagaaaaaggcattgccccttgtacctatttttccgcccaggaggttgcctatgat
aatttggaaggttggtctcccagcaattccggaaaggaagatgagacctatctaaactat
tccatggaacaggccttgagtaattccataaatacggtggccgttaaagtgttggaagaa
accggcatcccaaatgttatcgggcaagccaaaaagatgggaataacaagtaatctaccc
caccttccttcacttgcactgggtaccgcagaaataaaaataaacgaactaattggggcc
tatgccagttatgtgaacgctggtaaatccgtaaccccatttgccatcacacatattgcc
aataccaaagactctattttggcaaactttcaacccgtcatcgcaaaacaacctgccttc
tcaaaagaaacgggcatgctacttttggaaatgatgaaagcaacggttgataaaggaact
gcagccagaattagatcaaaatacaacctaaccaatgccattgcaggtaagacaggtacc
acccaaaacaataaggatgcctggtttgttggcataacccctaagctcgtaagtattacg
tgggtaggattggacacctatgaaataggctttaaaagcaccagtttaggtcagggagcc
aatgcggcattaccaattttcgccctatggttgcagaaattgaacaaggaaaaacaattt
aatggtatcacccaggctcgtttcgaaaacccgagcccaacagtattggatcaattggat
tgtgaacctattaaaagggatgggttttttaaacgcctgttcaaaaaccccaataaaaca
aaaaagtttaagaacaacagcaattaa
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