Sediminicola sp. YIK13: SB49_01720
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Entry
SB49_01720 CDS
T04145
Name
(GenBank) peptidoglycan-binding protein LysM
Organism
syi
Sediminicola sp. YIK13
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Gene cluster
GFIT
Motif
Pfam:
LysM
LysM_RLK
Peripla_BP_6
LysM1_NFP_LYK
ANF_receptor
Phage_tail_X
Motif
Other DBs
NCBI-ProteinID:
ALM06664
UniProt:
A0A0S1S892
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Position
369770..371935
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AA seq
721 aa
AA seq
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MGIGMNSTRFKILITGFFMLFLCLHMNAQQFATHAVKKGETLESIAKQYRVTPFNILKYN
KEIVQGKPLVANTVLVIPMASKSADPNVPVVKSKVTAVVKEDKVVQENPIGFTSYRARRR
DTLYGIAKRFNITVEDIKRYNKELYAGNLKKGMNLRIPKFRRVNPEDVAKSEEDFEMYTV
KPKETRWSIANSYGITIDELLELNPELSKTNNYLMEGQELKLPKIKGSTVDNQKIQLYNS
YVITPKQTFYNLEKQFGVTEEEIKALNPEVKVRGLQEGMIIRLPKKDMAPKEVVNTDKYV
FYEVKPQETEFRLTRKLNVTYSELLALNPELSDGLKAGMILKIPKAKAQDLEIKNSLVLD
KFSLIDSIQTTNRPNLLFLLPFRTDKIDVTDKELAKQTMANRNDSKYSIGMYTGAMVALD
SIKKLGVSVNVKTFDTQLNVDRVKGIMLREKLNDVSAIIGPLDAKSLKEVALAAGQYNVP
VIAPIAAESDISLRNVYFTLPTEEVLRNKMIAYVNDHRKEENIVIIADDNNKKTQSLLLE
KFPQAKTLNLKDNISLDIEKVKQVVSAKQNWVFLESDNANTIYHVSSVLNSTIKDTVKIK
MFTTNRNKAFENDVISNSHLSNLGFTFPSIEKEIGANSFVKMYRRKYGIEPDRYATRGFD
ITFDILLKLAYKNDLFEAGKKIGETSYSANKFNYLKDASSGYYNQSAYIMSYNKMMIVEA
E
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgggaataggaatgaacagtacacgttttaaaatacttattacaggcttctttatgctg
tttttatgtttacacatgaatgcacagcaatttgcaacacatgcggtaaagaagggtgaa
acattggagagtattgcaaaacaatacagagttaccccattcaacatcttaaagtacaac
aaggaaattgttcaagggaagcctctggtagctaataccgtattggtaattccgatggca
tccaaatctgctgaccctaatgttcctgtggtaaaaagcaaggtaactgcagttgttaag
gaggataaagtggtccaagaaaatcccattggctttaccagttatagggcaaggcgtaga
gatactctatacggcattgccaagaggttcaatatcaccgttgaagatattaagcgttac
aacaaagaattgtatgctggaaatcttaagaaagggatgaaccttaggatccctaagttc
agacgcgttaatcctgaggacgttgccaaaagtgaggaggattttgaaatgtacacggta
aagcctaaagaaaccaggtggagcatagcaaactcgtatgggattacaatagatgaactt
ctggaactgaaccctgaactttccaagaccaataactacctgatggaagggcaggaatta
aaattgccaaaaattaaagggagtacagtagataatcagaaaatccaattgtataattcc
tatgttatcacgccaaaacagacattttacaatcttgaaaaacaattcggtgtaacagaa
gaagaaatcaaagcgttaaatcctgaggtgaaagttcgtggactacaagaagggatgatc
atacgcttgcccaaaaaggatatggcccccaaagaggtcgtaaatacagataaatatgtt
ttctacgaggtgaagcctcaagaaactgaatttagactaaccagaaagctaaatgtcacc
tattctgaacttttggctttaaatccagaactcagtgatggcttaaaagcagggatgatt
cttaaaattccaaaagcaaaggcgcaagatctagagatcaaaaactccttggtgcttgat
aagtttagtctgatagatagtatccaaaccacaaataggcccaatttacttttcttgctt
ccttttagaacggataaaatagatgttacggataaagaattggccaaacagacaatggcc
aataggaatgatagtaagtacagtattggaatgtatactggagccatggtggctctggat
tccataaaaaaattgggggtttctgtcaatgtgaaaacctttgacactcaattgaatgtg
gacagggtgaagggtattatgttacgtgaaaaattaaacgatgtaagtgccataatagga
cccttggatgctaagtccctaaaagaggtggctttggccgctggacagtacaatgttcct
gtaattgcccctatagctgcggaaagtgatataagtttgcgcaatgtttattttaccctt
cctacagaagaggtgttaaggaataaaatgatagcctatgtgaacgatcacaggaaggaa
gaaaacattgttatcattgctgatgacaacaataagaaaacccaaagtctgcttttggag
aaatttcctcaggctaaaactcttaacctaaaggacaatatttcattggatattgaaaag
gtgaaacaggtagtttcagcgaaacaaaattgggtgttcctggagtctgataatgccaat
accatctatcatgtgagctctgtcttgaattctacgatcaaggataccgtaaagattaaa
atgtttacgaccaacaggaacaaagcctttgaaaacgatgttatttccaattcacatctt
tcaaatcttggatttacctttccgtcaattgaaaaggagatcggggccaattcctttgtg
aaaatgtatagaagaaaatatgggattgagcccgatcgatacgctactcgagggtttgat
atcacatttgatattctgttgaagttggcctacaaaaacgacttgttcgaagctggtaaa
aaaattggggagacttcctattcagcaaataagttcaactatttaaaggacgcatcatct
ggctactacaaccagtcggcctatattatgtcctacaataaaatgatgatcgtagaggcc
gagtag
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