Sediminicola sp. YIK13: SB49_03050
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Entry
SB49_03050 CDS
T04145
Name
(GenBank) tRNA-splicing ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
syi
Sediminicola sp. YIK13
Brite
KEGG Orthology (KO) [BR:
syi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
syi03016
]
SB49_03050
Enzymes [BR:
syi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
SB49_03050
Transfer RNA biogenesis [BR:
syi03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
SB49_03050
Prokaryotic type
tRNA splicing ligases
SB49_03050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ALM06893
LinkDB
All DBs
Position
complement(682543..683991)
Genome browser
AA seq
482 aa
AA seq
DB search
MKIGKQHLNKIEDYLWEIPKSFHKNMLVPARVLAHEPILDDIIGDRSLVQLVNVASLPGI
QGASWVMPDVHEGYGFPIGGVAATSHPDGAISPGGIGYDINCGVRLLTSIIMVEEVKDKI
EALSKEMYAQIPSGMGKGGFLHLTQKELEDVLSQGAKWAVDKGYGKTKDLAFIENNGRLP
DADPSKVSERAKSRGLDQLGTIGSGNHFVEVDFVDEIYEPDVAEAFGLKKGQLVVLIHTG
SRGLGHQIATDHIKIMMTAMDKYGIQVPDRELTCVPFSSLEGQNYYKAMCAAANYAWANR
QVITWEARKAWANIFGKDHGQLELMYDVAHNMAKLETHKVDGKPHPLIVHRKGATRAFGP
GFSELPESYNLLGQPVIIPGSMGTSSYILIGTSKSHDLTFGSCCHGAGRRLSRTASKKQV
NAPQLKEQLKERGIYVQAGSFKGIAEEAPIAYKDVNLVVETVSDAGIAKKVAKLRPVAVV
KG
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatcggcaaacaacatcttaacaaaattgaggactatctgtgggaaatccctaaa
tcgttccataaaaatatgttggtccccgcaagggtattggcccatgaacccattttggac
gacatcataggggacaggtcattggtacaattggtcaatgtggcaagtttgcccggtatt
cagggagcttcttgggtaatgccagacgttcatgaaggttatgggttccctattgggggt
gttgctgctacttcacatcctgacggtgccatttctccagggggaattggatatgacatc
aattgtggggttcgcttactaacctcaatcataatggtagaggaggtgaaggacaaaata
gaagcgttatccaaggaaatgtacgcccaaattccttcgggaatgggtaaaggagggttt
cttcatcttacccaaaaagagttggaagatgtgttgtcccaaggggccaaatgggctgtt
gacaaaggctatggcaaaacaaaagatctcgcatttattgagaacaacggacgcttaccg
gacgcggacccctccaaagtttctgaaagggcaaaaagtaggggcctggaccagcttggc
accataggctcgggtaaccattttgtggaagtggattttgtggatgaaatatatgaaccg
gatgtcgccgaagcctttggattaaaaaaaggacaattggtggtgctgatccatacaggc
tccaggggacttggacaccaaatagccacagaccatataaagatcatgatgaccgccatg
gataaatatggcatacaggttcccgatcgcgagctcacctgtgttccttttagttctctt
gaaggtcaaaattactataaggccatgtgtgctgcggccaattatgcatgggccaacagg
caggtaattacttgggaggccagaaaagcatgggccaacattttcggaaaggaccatggc
caacttgaactcatgtatgatgtggcccacaacatggccaaactagaaacgcacaaggta
gatggcaaaccacatcctttgattgtacatagaaaaggagcgaccagggcttttggacca
gggttcagcgagctaccggaatcctataaccttttaggccaaccagtcattattccgggc
agtatgggcacaagttcctatatcctgataggcacctccaagagccacgaccttacgttt
ggttcctgttgtcacggtgccgggcgacgcttgtccagaaccgcctcaaaaaaacaagta
aatgcaccacaattgaaggaacaattaaaagaaaggggtatctacgtgcaggccggttcg
ttcaaaggaattgccgaggaggcgccaatagcatacaaggacgtcaatctagtagtggaa
accgtatctgatgccggaattgcaaaaaaggtggccaagttaaggcctgtggctgtggtg
aaagggtaa
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