Sediminicola sp. YIK13: SB49_03700
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Entry
SB49_03700 CDS
T04145
Name
(GenBank) DNA mismatch repair protein MutS
KO
K07456
DNA mismatch repair protein MutS2
Organism
syi
Sediminicola sp. YIK13
Pathway
syi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
syi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
SB49_03700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
syi03400
]
SB49_03700
DNA repair and recombination proteins [BR:
syi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
SB49_03700
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SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
AAA_21
Rad17
COG3_N
MSSS
Motif
Other DBs
NCBI-ProteinID:
ALM07005
LinkDB
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Position
complement(842978..845149)
Genome browser
AA seq
723 aa
AA seq
DB search
MNNIQQKTLQDLEFFTVLDQLSLRCNTELGKEKALTVVPFYSKESILNSLGQTSEYLASY
TNDNRVPNHGFDAIHQELKLLKIENTSLEITGFRKIGNICNTVTTHLKFFKKFKEYYPLL
YKASDVIELNSDIPTQIDMVIDRFGEIKDNASDNLKTIRHEINFVKGKINQSFGSALNTY
NASDFLDEIRESVVENRRVLAVKAMYRKKVKGAVMGSSKTGSIVYIEPEATLKYSRELNN
LEFDETEEIKKILKYLTEHIRPHAPLLHTYQEFLTDMDITAAKAKYAMDMNAVMPEISSD
KKMNLRDAYHPLLYLSNKRKKEKTYPQTIALYPENRIIVISGPNAGGKSITLKTIGLLQV
MVQSGMLIPVHERSTVCLFDKILTDIGDNQSIENHLSTYSYRLKNMNSFLRKCNESTLFL
IDEFGTGSDPELGGALAETFLEVFYERGAYGVITTHYSNLKMLANELPEMTNANMLFNSS
TLEPTYQLVLGQAGSSFTFEVAQKNGIPYSLINKAKKKIERGKVRFDATIAKLQKERSKM
EKTGSQLKEEESKAREEAKRLEDLNSKIKSKLENYQELYDHNQRMIYLGNKLNDAAGKYF
QDKKKRPLVSELLRIVETENSKRKKKSVKEVKIEKQKKVEVAQELEQKIVKVREDKKKEK
KKAIVQEKNKPRPIFKIGDRVRLQDGKAVGSIDSLEKNKAVVNYGVFTTNVSVEQLELVQ
AKK
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgaacaacattcaacaaaaaacactacaagatttagaattttttactgttttggaccaa
ctatccctccgttgcaatacagaattgggaaaagaaaaggccttgaccgttgttcccttt
tacagtaaagagagtattttgaatagtttagggcaaacctctgaatacttggcatcttac
actaatgacaatagggttcccaatcacgggttcgatgccatacaccaagaattgaaactc
ctaaaaattgagaacaccagtcttgaaattaccggtttccgaaaaattggaaatatctgt
aatacggttaccacccaccttaaattttttaaaaaatttaaggaatattaccctttgttg
tacaaggcctctgacgtaattgaactaaattccgatatcccaacccagatagatatggtc
attgaccgttttggagaaataaaggacaatgcttcggacaatttaaaaactatcagacac
gaaattaactttgtcaaaggaaaaataaatcaaagtttcggttccgctttaaacacctat
aacgcctctgattttttggatgaaatccgggaatctgtggtagaaaaccgaagggttctc
gctgttaaggccatgtatcggaaaaaagtaaaaggagctgttatgggttcctctaagact
gggagcattgtttatatagagccagaggctacgttaaaatacagtagggaattgaacaat
ctagaatttgatgaaactgaggaaatcaaaaagatcctaaaataccttacagagcacatt
agaccccatgcccccttgttgcatacataccaagagtttttgacagatatggatattacg
gctgcaaaagctaaatatgccatggacatgaatgctgtgatgccagaaattagttcggac
aagaagatgaacctcagggatgcctaccatcctttattgtatttgagcaataaaagaaaa
aaggaaaaaacgtatccacagaccatagccctttaccctgaaaataggatcatagtgatc
tcgggccccaacgccggggggaaaagtatcactttaaagactattgggttgcttcaggta
atggtgcaaagtggaatgcttattcccgttcacgagcgcagtaccgtatgcctgttcgat
aaaatattgacagatatcggggataatcaatccattgaaaaccacctgagtacttatagc
taccgtttaaaaaacatgaacagcttcttgcgaaaatgcaatgaaagcaccctcttttta
attgatgagtttgggacagggagcgatccggaacttggtggggctctggcagaaaccttt
ttggaggtattttacgaacgcggagcctatggggtaattaccacccattattccaacctt
aaaatgttggccaacgaactcccggaaatgaccaatgccaacatgttgttcaattccagt
accctggagcccacctaccaattagttttgggacaggcaggaagctcctttacatttgaa
gtggcacaaaaaaatggaattccctatagtcttatcaataaagcaaagaaaaaaatagaa
cgcggaaaggttcgatttgatgccaccatagccaagctccaaaaagaaaggagcaaaatg
gaaaaaacagggtctcaattaaaggaagaagaatcgaaagccagggaagaagcaaaacgt
ttggaggacctcaattcaaagataaaatccaagttggaaaattaccaagagctctatgat
cacaaccaacgcatgatctatttggggaacaaactcaatgacgcagcagggaaatatttc
caagacaagaagaaaaggcccttggtctcggaattgttacgcatcgtagaaaccgaaaat
agcaaacgcaagaagaaaagtgtaaaagaggtcaaaatagaaaagcagaagaaggtagaa
gtagcccaggaattggagcaaaaaatagtcaaggtcagggaggacaaaaagaaagagaag
aaaaaagctattgtccaagaaaaaaacaaaccaagacccatctttaaaattggagacagg
gtacgcttacaggatggtaaggcagttgggagtatagacagtcttgaaaaaaacaaggca
gtggtcaattatggtgtttttactaccaacgtaagtgtagagcaattggagctggtgcaa
gccaaaaaataa
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