Sediminicola sp. YIK13: SB49_04100
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Entry
SB49_04100 CDS
T04145
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
syi
Sediminicola sp. YIK13
Pathway
syi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
syi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SB49_04100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
syi03019
]
SB49_04100
03400 DNA repair and recombination proteins [BR:
syi03400
]
SB49_04100
Enzymes [BR:
syi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SB49_04100
Messenger RNA biogenesis [BR:
syi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SB49_04100
DNA repair and recombination proteins [BR:
syi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SB49_04100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
Helicase_C
HTH_40
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
Glyco_tran_WecG
Peripla_BP_4
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
ALM07074
LinkDB
All DBs
Position
930705..932813
Genome browser
AA seq
702 aa
AA seq
DB search
MTDSSTLIPTLKKYFGFDSFRNQQEEIINTVLEQKDCLVIMPTGGGKSICFQLPALMLSG
VTLVISPLIALMKDQVDGLRANGIEADYFNSSQAAEEQQEILEKVMTSKLKLLYVAPESL
GALENILKETYISCVAIDEAHCISSWGHDFRPSYQQLSFLKRSLPNTPIIALTATADKAT
RQDIIDQLQIPNAKQFITSFDRKNIGLEVRPANDRVNQIIDFIGQRPNQSGIIYCLSRKS
TEQLKDRLQSKGIDAHAYHAGLNFEERTKVQEDFIFDKIQVVCATVAFGMGIDKSNVRWV
IHYNMPKNLEGYYQEIGRAGRDGTKAKALLFHSYADVLQLRRFIDGTTNEQLQVAKLDRM
KQFSEATSCRRKILLSYFGELLAKNCGNCDICKNPPQFFNGTVIAQKALSVITRLRQSEP
MGVIIDVLRGAKNATTLDKHYDQIPSYGIGNDISWKDWQHYIIQLIDQGYCEIAFHKHNA
LQLTHFSKEVLFNGQQVQMTKPLDRNVQLEEQKEKAKKSKKKDTLFERLRLLRLKISLEE
NIPAYLIFSDATLKEIEAERPMNEAEFMQISGVGQRKMEVYGDEFISEINAFMAEKKKKP
KKSDTVKVTYEMYKKGMSIEAIAEARDLKAPTVFSHLSKLYSEGKDIDMYQFVTKEEVHS
VKNAKKELNSPEGLKPYFDHFNEELEYSKIRLALTILERENS
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
ttgaccgattccagcacccttattcccactttaaaaaaatacttcggatttgatagtttt
cgcaaccaacaggaggaaattatcaatactgttttggagcaaaaggattgtttggtgatc
atgccaacaggaggaggaaaatctatatgtttccaattgcctgccttgatgctcagtggt
gttaccttggttatttcccctttaattgccctaatgaaggaccaagtggatgggttacgg
gccaatggcatagaagccgattattttaatagtagccaggcagccgaagaacaacaagaa
atcttagaaaaagtaatgacatcaaagcttaagctgctttatgttgctccggaaagtcta
ggtgctttagaaaacattttaaaagaaacgtatattagttgtgtggccatagatgaggcg
cattgtatctcttcttggggacatgattttcgtccatcataccaacaattgtccttttta
aaaagatccttgcccaacacccccattattgcccttaccgcaaccgctgataaggccaca
agacaagatatcattgatcagctgcaaattcccaatgccaagcaattcattacctccttc
gacaggaaaaatattgggttggaagtaagaccggcgaatgatagggtaaaccagatcata
gattttataggtcaaagaccaaatcaatcgggaatcatctattgtttgagccgtaaatcg
actgagcagttaaaagacaggctgcaaagcaaagggatagatgcccatgcctatcatgca
ggattgaattttgaagaacgcacaaaagtacaggaagattttatttttgataagatccaa
gttgtctgtgccaccgttgcttttggaatggggatagataaatctaacgttcgctgggtg
atccactacaacatgccaaaaaacctagaggggtactaccaagagatcggtcgcgctgga
agagatggcaccaaggcaaaagcactcttgttccacagttatgcggatgtgttacaatta
cgaagattcatagatggcacgaccaatgagcaactgcaggttgctaaattggatcggatg
aaacaattttccgaggccacgagttgtaggcgaaaaatacttctgagttattttggggaa
ctcttggcgaagaattgtggaaactgtgatatatgtaaaaacccacctcaattctttaat
ggaaccgttatagcacaaaaagcattatcagtgattaccagactaaggcaatcagaaccc
atgggggtaattatagatgtgctcagaggagcaaaaaatgccaccacattggacaaacac
tatgatcaaattccctcctacgggataggaaatgatatctcctggaaagattggcaacat
tatatcatacaattgatagaccaaggctattgtgagatagcttttcacaagcacaatgcg
ctacagcttacccatttttccaaggaagtactttttaatgggcagcaagtgcaaatgacg
aagcctttagatagaaatgtgcaattggaagaacagaaagaaaaggccaaaaagtccaag
aaaaaagataccctgtttgaaaggttacgactgctgcgcttaaaaatatcgttggaggag
aatattccggcatatttgatttttagtgatgccaccttgaaggaaatagaggccgaaaga
cccatgaatgaagctgaatttatgcagatcagcggtgtgggacaacgtaaaatggaagtt
tacggtgacgagttcatctcggaaataaatgcctttatggccgagaaaaaaaagaagccc
aagaaatccgatacggtcaaggttacctatgaaatgtataagaaagggatgtccattgag
gcaattgccgaggccagggatttaaaagcacccacagttttttcgcacctttccaaatta
tacagtgagggcaaggacatagatatgtaccaatttgtgaccaaagaagaagtccattct
gtgaaaaatgcaaaaaaagagttgaattctccagaaggactaaaaccttattttgatcat
tttaatgaggaattggagtattccaaaatacgtttggccctcactattctagagagggaa
aacagttaa
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