Sediminicola sp. YIK13: SB49_04305
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Entry
SB49_04305 CDS
T04145
Name
(GenBank) RNA polymerase sigma factor rpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
syi
Sediminicola sp. YIK13
Pathway
syi02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
syi00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SB49_04305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
syi03021
]
SB49_04305
Transcription machinery [BR:
syi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SB49_04305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r1_2
Sigma70_r4_2
PgaD
HTH_20
AnkUBD
TFIIE_beta
Motif
Other DBs
NCBI-ProteinID:
ALM07107
LinkDB
All DBs
Position
972358..973221
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AA seq
287 aa
AA seq
DB search
MRQLKIIKQVTNRESKSLDKYLQDISKIDMITANEEVELAQKIREGDQLALNKLTTANLR
FVVSVAKQYQNQGLKLPDLINEGNVGLVKAAKRFDETRGFKFISYAVWWIRQSILQALAE
QSRIVRLPLNKIGSINKIKKAFSYLEQAHERPPSAEEIAKELDLSVSEVKQSMKNSGRHV
SMDAPLIEGENSNLYDVLRSGESPNPDKKLLLQSLNTEINRALETLSQREADVVKLYYGI
GDQHSMTLAEIGQTFDLTRERVRQIREKAIRKLRHNSRSKILKTYLG
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atgaggcaactaaagatcatcaagcaggtaacaaacagggaatcaaaatcattggacaag
tacttgcaagatatcagtaagattgatatgattaccgcaaatgaagaagtggagctggcc
cagaaaataagagaaggtgatcaattggccttgaacaaattaactactgcaaatttaaga
tttgttgtttccgttgctaaacaatatcaaaatcaagggttaaaattaccagatttgatc
aacgaggggaatgtaggcctggtaaaggcagccaaacgttttgatgagacgaggggattt
aaatttatttcctatgcggtttggtggatcagacaatctattttacaagccttagccgaa
cagtctagaattgtacgattgcctttaaataagatcgggtccataaacaagattaaaaag
gccttttcctacttggaacaagctcatgagcgaccgccttctgccgaagaaatagccaag
gaattggatctttccgtaagcgaagtaaagcagtcgatgaaaaactccgggaggcacgta
agtatggatgctcctctgattgaaggcgaaaattccaatttatatgatgtacttcgttcg
ggagaatcccctaacccagataaaaagttattgctgcaatccctgaacacagaaattaat
agggctttggaaactctttcccaaagagaagcagatgttgtaaaactgtactacgggatt
ggagaccaacattccatgaccttggccgaaataggacagacttttgatctgaccagggaa
agagtaagacaaatacgggaaaaggccattagaaagctcagacacaactcaaggagcaag
attctaaagacgtatttgggataa
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