Sediminicola sp. YIK13: SB49_04400
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Entry
SB49_04400 CDS
T04145
Name
(GenBank) pseudouridine synthase
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
syi
Sediminicola sp. YIK13
Brite
KEGG Orthology (KO) [BR:
syi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
syi03016
]
SB49_04400
Enzymes [BR:
syi01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
SB49_04400
Transfer RNA biogenesis [BR:
syi03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
SB49_04400
Prokaryotic type
SB49_04400
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
Motif
Other DBs
NCBI-ProteinID:
ALM07122
LinkDB
All DBs
Position
complement(995566..996351)
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AA seq
261 aa
AA seq
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MQKERYYYLIELQFLGFRYSGWQKQPGQKTIESMLLKTLKFILPERKFKILGAGRTDAKV
SALHAAFELFLDDAPLNDLMVFKALFNRNLPPDIRITSILSVDKDFNVIQHSKEKEYVYL
FSYGQKNHPFSAPFIANIQDDLDLGLMTKATSLFVGSHDFRNYTTRHQENTNSKRRIKSC
LIQENTILKANFFPEKSYALHIVSEGFMRYQVRMIMGALILLGKGELSLNDIEESLKPDT
AFLLSYVAPGSGLLLNRLDFQ
NT seq
786 nt
NT seq
+upstream
nt +downstream
nt
atgcagaaggaacgctattattacttgattgaattacaattcttgggattccgatatagt
ggatggcagaagcagccgggccagaagactattgagagcatgctcctcaaaaccttaaag
tttatattgcctgaaagaaaattcaaaatcttgggggcaggacgtaccgatgcgaaggtt
tccgcactacatgccgcctttgaactatttttagatgatgctccgctgaacgacttaatg
gtatttaaagcgctattcaatagaaatttacccccagatattagaattacatctattttg
tctgtcgataaggactttaatgttattcaacatagtaaggaaaaggaatacgtctattta
ttttcatacggccaaaaaaaccatccctttagtgctccctttattgccaacatacaggat
gatctggatttgggactgatgaccaaagccaccagtttgtttgtggggagccatgatttc
cggaactacacgacaaggcatcaggaaaacaccaattccaaacgaagaataaaaagctgt
ttaatacaagagaacacgatcttaaaggccaattttttccccgaaaaaagctatgccctt
catatagtatcagaaggttttatgcgctatcaggtacgcatgatcatgggtgccttaatt
ttattgggaaagggggagctcagcctaaatgatatagaagaatccctaaaaccagatact
gcttttcttttgtcctacgttgcaccaggttctggtttattgttgaatagattggacttt
caataa
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