Sediminicola sp. YIK13: SB49_05225
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Entry
SB49_05225 CDS
T04145
Symbol
glyA
Name
(GenBank) serine hydroxymethyltransferase
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
syi
Sediminicola sp. YIK13
Pathway
syi00260
Glycine, serine and threonine metabolism
syi00460
Cyanoamino acid metabolism
syi00630
Glyoxylate and dicarboxylate metabolism
syi00670
One carbon pool by folate
syi00680
Methane metabolism
syi01100
Metabolic pathways
syi01110
Biosynthesis of secondary metabolites
syi01120
Microbial metabolism in diverse environments
syi01200
Carbon metabolism
syi01230
Biosynthesis of amino acids
syi01240
Biosynthesis of cofactors
syi04981
Folate transport and metabolism
Brite
KEGG Orthology (KO) [BR:
syi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
SB49_05225 (glyA)
09102 Energy metabolism
00680 Methane metabolism
SB49_05225 (glyA)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
SB49_05225 (glyA)
09106 Metabolism of other amino acids
00460 Cyanoamino acid metabolism
SB49_05225 (glyA)
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
SB49_05225 (glyA)
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
SB49_05225 (glyA)
Enzymes [BR:
syi01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
SB49_05225 (glyA)
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Motif
Pfam:
SHMT
Beta_elim_lyase
DegT_DnrJ_EryC1
Aminotran_1_2
DUF4853
Motif
Other DBs
NCBI-ProteinID:
ALM07267
UniProt:
A0A0S1SBS7
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Position
complement(1178311..1179585)
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AA seq
424 aa
AA seq
DB search
MQRDNQIFELIEAEKERQLEGIELIASENFTSPQVMEAAGSVLTNKYAEGYPGKRYYGGC
EIVDEVEQIAIDRAKELFGAAYANVQPHSGSQANASVYHACLQPGDKILGFDLSHGGHLT
HGSPVNFSGRLYSPVFYGVDEETGVLNYDKIQEIATKEQPKMIIAGASAYSRDMDFKRFR
EIADSVGALLLGDISHPSGLIAKGILSDPLPHCHIVTTTTHKTLRGPRGGLILMGEDFDN
PFGIKLKNGSLRKMSALLDLAVFPGNQGGPLEHIIAAKAIAFGEALTDEFLHYMLQVKKN
AAAMAAAFMAKDYKIISGGTDNHMMLIDLRNKDITGKEAENVLVKADITANKNMVPFDDK
SPFITSGIRFGTAAITTRGLKEADMATIVEFIDTVLTNKDNEDLIEGVRDQVNELMRGKA
LFNA
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atgcagagagataatcaaatttttgaattaatagaggcggagaaggaacgtcaattggaa
ggcattgagttaatagcctctgaaaatttcaccagtccacaggtcatggaagccgctggt
tctgtgttgaccaacaaatacgcagaaggatatcctgggaaaagatattacggaggttgt
gaaatagttgatgaagtagagcagattgccatagatagggcaaaagagctttttggagct
gcctatgccaatgtacagccccattccggttctcaggccaatgcctctgtataccacgcc
tgtttacagcccggggataaaatattgggatttgatctttctcatggggggcatttgaca
catggttctccagtaaacttttcaggtcgcttgtattcacctgttttttatggtgtagat
gaggagactggggtattaaattacgataagatccaagagatcgccaccaaggaacaacca
aagatgattattgcaggggcgtctgcctactctagagacatggattttaaacgtttcagg
gaaattgcagatagtgtaggagctctcttgttgggagatatttctcacccttcaggtctt
attgctaaaggaatattgagtgatccccttccacattgccatattgtgaccacaaccaca
cacaaaaccttgagaggaccaagaggagggctaatcttgatgggtgaggattttgataac
ccatttggaataaaattgaaaaatggcagccttaggaaaatgtctgctcttttagattta
gcagttttcccgggaaatcagggtggacctttagagcacattattgcagctaaggcaatt
gccttcggagaggcattaacagatgaatttttgcattacatgttgcaggtgaaaaagaat
gccgccgctatggctgcagcctttatggccaaggactataaaattatttctggaggtaca
gacaatcatatgatgttgattgacctacgtaataaggatatcacagggaaggaagctgaa
aatgttttggtaaaagcagacatcacagcaaataaaaatatggttccttttgatgataaa
tccccttttataacttctggaatacgtttcggaacagctgcaatcactactagagggttg
aaagaggccgatatggccaccatcgtagaattcattgataccgtattgaccaataaagat
aacgaagacctaattgaaggagttcgtgatcaggtcaatgaattaatgagaggaaaggcg
ttgtttaacgcatag
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