Sediminicola sp. YIK13: SB49_05680
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Entry
SB49_05680 CDS
T04145
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
syi
Sediminicola sp. YIK13
Pathway
syi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
syi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SB49_05680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
syi03019
]
SB49_05680
03009 Ribosome biogenesis [BR:
syi03009
]
SB49_05680
Enzymes [BR:
syi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SB49_05680
Messenger RNA biogenesis [BR:
syi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SB49_05680
Ribosome biogenesis [BR:
syi03009
]
Prokaryotic type
rRNA helicases
SB49_05680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ALM07344
UniProt:
A0A0S1SBV1
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All DBs
Position
1269282..1271102
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AA seq
606 aa
AA seq
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MTKFEALGLDKSLLDAISDLGFETPSEVQEMAIPILLEDDTDLVALAQTGTGKTAAFGFP
LIQKIDKDSRTTQGLILSPTRELCLQITNELQLYSKYERSINVVAIYGGASITDQARQIK
RGAQIIVATPGRMKDMIGRGMVDISKIDYCVLDEADEMLNMGFMEDIKDILSNTPKEKNT
WLFSATMPREVATIAKKFMNNPQEITVGTKNSGATTVQHEYYVAGGRDRYPVLKRLADTN
PDIFSVIFCRTKRDTQRVAEKLIEDGYNAGALHGDLSQNQRDLVMNSFRKKQIQMLVATD
VAARGIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKSGISMVIITRSELRKIKAIENK
LNQKFISKKIPTGMEICEIQLYHLANKIKDTSINEEVESYLPAINDVFKGIDREELIKKI
ISVEFTRFFNYYNKTKDLNTSDGGDRRNDSDRPAQIPSDGSVRYFINVGEKDDYDWMSLK
DFLRDTLNVGQDDIYKVDVKESFSFFNTDASVTELILKTFTDFKLDGRFINVEISKNPGG
GGGGSRSGGRRSGGKRSESFGGRRSGGGDSDRGGRRSGGKGRERSASDSRKKDSGRKSSK
KKNGFF
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgacaaagtttgaagcactgggactagacaagtccctacttgatgctatttctgattta
ggatttgaaaccccatcggaagtacaagaaatggcaattccaatcttattggaagacgac
acggatttggtagctttggcccaaaccggtacaggtaaaaccgcagcttttggttttcca
cttatccaaaaaatagataaagacagtagaacaactcaaggattgatcctctctcctacg
agggaattatgtttgcagatcaccaatgaacttcaattgtattccaaatacgaaagaagc
attaatgttgttgccatttatggtggtgccagcattaccgatcaggcaagacagattaaa
agaggggcccaaattattgttgctactccaggtcgtatgaaggatatgatcggtcgtgga
atggtagacatttcaaaaatcgactattgtgttttagatgaggccgatgaaatgttgaac
atgggctttatggaggatattaaggatatcctttcaaataccccaaaggaaaaaaacaca
tggttattctccgcaacaatgcccagagaagtggcaactattgcgaagaaatttatgaat
aaccctcaggaaattacagtggggaccaaaaattcaggcgcaacaaccgtacagcacgaa
tattatgtagctggcggaagggatcgttaccctgtcctaaaaagattggctgataccaat
cctgatattttctccgtaattttttgtagaaccaaaagggatacgcaaagagttgccgaa
aaattgattgaagatggatacaatgcaggtgcacttcacggagatttgagccagaaccaa
cgagatttggtaatgaactcgttccgtaaaaaacaaattcaaatgttggtggccacagat
gttgccgctaggggaatagatgttgatgatatcacccacgtgatcaactaccaactgcct
gatgaaattgaaacctatacacaccgtagtggtcgtactggtagagcaggaaagtccggt
atttcaatggtgatcataacccgtagcgaattgcgcaagataaaggctattgaaaataag
ctaaatcagaagttcatctccaaaaaaatcccaacgggaatggagatttgcgaaattcag
ttgtaccatttggccaacaaaataaaggacacttctatcaatgaagaagttgaaagctat
ttacctgcaatcaatgacgttttcaagggaattgaccgcgaagaattgatcaaaaaaata
atctctgttgaatttactagattcttcaactattataacaagaccaaagacctgaacaca
tcggatggtggagatcgcagaaatgattctgaccgtcctgcacaaatacctagtgatggt
tctgttcgttactttataaatgttggtgaaaaggatgattacgattggatgtccttaaag
gatttcttaagggacacccttaacgtaggtcaggatgatatttacaaagtagacgttaaa
gaaagtttctctttctttaatacagatgcctcggtaaccgaactaattttaaaaaccttt
accgactttaaattggacggaaggtttataaatgttgaaatttccaagaacccaggtggt
ggcggaggcggaagccgaagcggcggaagacgcagcggcggaaaacgcagtgaatcattc
ggtggaagacgcagcggtggcggagatagtgatcgtggcggaagacgcagcggcggaaaa
ggccgtgaacgaagcgcctccgatagtcgcaaaaaagactccggaaggaaatcgtccaaa
aagaaaaatggcttcttttag
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