Sediminicola sp. YIK13: SB49_06815
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Entry
SB49_06815 CDS
T04145
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
syi
Sediminicola sp. YIK13
Pathway
syi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
syi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SB49_06815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
syi03019
]
SB49_06815
03400 DNA repair and recombination proteins [BR:
syi03400
]
SB49_06815
Enzymes [BR:
syi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SB49_06815
Messenger RNA biogenesis [BR:
syi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SB49_06815
DNA repair and recombination proteins [BR:
syi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SB49_06815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
RQC
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HTH_40
DUF7897
HHH
Motif
Other DBs
NCBI-ProteinID:
ALM09206
LinkDB
All DBs
Position
complement(1541220..1543421)
Genome browser
AA seq
733 aa
AA seq
DB search
MGLNGMDIHASLKKYFGFSKFKGLQEQVIKNIVQGKNTFVIMPTGGGKSLCYQLPALMQE
GTAIVVSPLIALMKNQVDAIRGISSENGIAHVLNSSLTKTEIRQVKEDITSGITKLLYVA
PESLTKEEYVDFLQSVKVSFVAVDEAHCISEWGHDFRPEYRNLRTIIARLGDDIPIIGLT
ATATPKVQEDIIKNLGITEAKVFKASFNRPNLYYEVRPKTANIEGDIIRFVKQNSGKSGI
IYCLSRKKVEELAQILQVNGISAVPYHAGFDAKTRSKYQDLFLMEGVDVVVATIAFGMGI
DKPDVRFVIHHDMPKSIESYYQETGRAGRDGGEGHCLAFYSYKDIEKLEKFMSGKPVAEQ
EIGNALLQEVVGYAETSMSRRKFILHYFGEEFDEVNGEGAEMDDNTRNPKEKQEAKDDVV
KLLQVVQGTKEKFKSKEIVKTLTGKVNALISSHKTDEKPFFGIGKEKDKGYWMALIRQTL
VAGLMKKEIEQYGILHVTEKGANYLKNPTSFMMTMDHIYSQAADDAIVSAAKTAGGVADE
NLLQLLKDLRKKEAKKLEVPPFVVFQDPSLQDMALKYPITVEELVNIHGVGEGKAKKYGK
PFVKFIANYVEENDILRPDDLVVKSTGANSGLKLYIIQNVDKKLPLDDIAAAKGLNISEL
IKEMEQIVFSGTKLNLSYWVDEILDDDQQEEIHDYFLDAETDNIEEAIKEFDGDYEDEEL
RLYRLKFISEVAN
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atgggtttgaatggaatggatatacatgcctcattaaaaaaatactttggattttcaaag
ttcaaaggtcttcaagaacaagtcataaaaaatatagtacaaggaaagaatacctttgta
attatgcctactggtgggggtaaatccctatgctaccagctccctgctctcatgcaagaa
ggaacagcaattgtggtctctccactaatagccctgatgaaaaaccaagtggatgccatt
cgtggaatatcctctgagaacggcattgcgcacgtattaaactcctctttgaccaaaacg
gaaattaggcaggtaaaggaggatataaccagtggaattacaaaattactttacgtggca
ccggaatcccttaccaaggaagaatatgtagattttttacaatctgtaaaagtatccttt
gtggccgtggatgaggctcattgcatctcggaatggggacacgactttagacctgaatat
cgaaatttacgtaccattattgctaggttgggcgacgacataccaattattggtttaacc
gctaccgccacaccaaaagtacaggaagatattattaaaaatttgggaattacagaggcc
aaggttttcaaggcatctttcaatagaccaaatttatattatgaggtacgcccgaaaaca
gccaatatagaaggggatatcattcgttttgtaaaacaaaattcaggtaaatcaggaatc
atatattgtttgagccgtaaaaaggtagaagaactggcccagatattacaagttaatggc
attagtgccgtgccttatcatgcgggcttcgatgcaaaaacaagatctaagtatcaagat
ttgtttttgatggaaggtgttgatgttgtggtagctaccattgcatttggaatgggaata
gataaaccagatgtgaggtttgtgatccaccatgatatgcctaaaagtattgaaagttac
tatcaggaaactggccgtgccggaagggatggtggcgaaggtcattgtctcgcattttat
tcctataaggatattgagaaattagaaaagttcatgtccggtaaacccgtggcggaacag
gaaatagggaacgcccttctacaggaagtagtgggttacgctgaaacctccatgtcccga
agaaaatttatccttcattatttcggtgaagaatttgatgaggtgaacggcgaaggagcg
gaaatggatgataataccagaaatcccaaggaaaagcaagaggcaaaggatgatgttgtt
aaacttctccaagtggtacagggtaccaaggaaaagtttaaatccaaggaaattgtcaaa
accttgacaggaaaggtcaacgctctgatttcttcgcataaaaccgatgaaaagccattc
tttggtataggtaaagagaaagataaggggtattggatggctcttatacgacagaccttg
gtcgcggggcttatgaagaaggaaattgagcaatacggaatccttcatgtcacggagaaa
ggggccaattatctcaagaatcccacatcgtttatgatgacgatggatcatatctatagt
caggcagcagatgatgccattgtaagtgcggcaaagactgctggtggtgtagccgatgaa
aacttgttacaattattgaaggaccttagaaaaaaggaagcaaaaaaattagaggtaccg
ccttttgtggtattccaggatccctctttgcaagatatggctttgaagtatcccattacg
gtggaagaacttgtcaatattcatggagtaggggaaggcaaagccaagaaatatggaaaa
ccttttgtaaaattcattgccaattatgttgaggagaatgatattctaaggccagacgat
cttgtagttaaaagtacgggagccaattcgggccttaagctctatattatccaaaatgta
gataaaaaattacctctagacgacattgcggccgctaaagggttaaacatttctgaattg
ataaaggaaatggagcagatcgtttttagtggaaccaaactcaatctgagttactgggta
gatgaaattttagacgatgaccagcaggaggaaatacatgattattttctggatgcggaa
acggacaatattgaagaagcaatcaaagaatttgatggggattatgaagacgaggagcta
cggttgtaccgattaaagtttataagcgaagtggccaattag
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