Sediminicola sp. YIK13: SB49_07715
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Entry
SB49_07715 CDS
T04145
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
syi
Sediminicola sp. YIK13
Pathway
syi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
syi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SB49_07715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
syi03021
]
SB49_07715
03019 Messenger RNA biogenesis [BR:
syi03019
]
SB49_07715
Transcription machinery [BR:
syi03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
SB49_07715
Messenger RNA biogenesis [BR:
syi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SB49_07715
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
OB_RNB
AAA_22
Mor
Motif
Other DBs
NCBI-ProteinID:
ALM07703
UniProt:
A0A0S1SB95
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All DBs
Position
1737224..1738906
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AA seq
560 aa
AA seq
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MFEISDLKSKKLPELQDIAKGLNVSKYKTLKKLDLVYQILDVQASNPKATETILASTTSN
SEEQIDSKPKRSRVLKEKSTAVKGERKPERRASTPKDSNETPKEDTSNNPKPEKTSNRTE
KTDSAPTERRPRPRPQHSTPKEAHVKKEHPKSAAPHKNLNKKPVHQKQDKNNSNFDKDLK
NRYKEPEYEFDSIIESEGVLDIMQDGYGFLRSSDYNYLSSPDDIYVSQSQIKLFGLKTGD
TVLGNVRPPKEGEKYFPLIKVNKINGLDPQIVRDRVSFEHLTPLFPQEKFNLAERQSTIS
TRIIDLFSPIGKGQRGMIVAQPKTGKTMLLKDIANGIAANHPEVYQIVLLIDERPEEVTD
MQRNVRGEVIASTFDKEATEHVRVANIVLEKAKRLVECGHDVVILLDSITRLARAYNTVQ
PASGKVLSGGVDANALHKPKRFFGAARNIENGGSLSIIATALTETGSKMDEVIFEEFKGT
GNMELQLDRKISNRRIFPAIDLTSSSTRRDDLLLDENTIQRMWILRKYLADMNPVEAMEF
IEQRIKQTKNNEEFLLTMNQ
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaaatttcagatttaaaatcaaaaaagcttcctgagcttcaggatatagctaag
ggtttaaatgtttccaagtacaaaaccctaaaaaaattggacctagtttatcaaatacta
gatgttcaggcctccaatccaaaggctacagagaccatactagcctccaccacttccaat
agtgaggagcaaatagattccaaaccaaaaagatctagggtcttaaaagaaaaaagcact
gcggtaaaaggggaacgtaaaccagaaaggcgtgcaagtactccaaaggactccaatgag
actccaaaagaggacaccagcaacaatccaaaacctgagaaaaccagcaataggactgaa
aaaacggatagcgcacctacagaaagaaggccaagaccacgtccacagcacagcacacca
aaagaagcgcacgtaaaaaaggaacatccgaaaagtgccgcgcctcataagaacttaaat
aaaaaacctgttcaccaaaaacaggacaagaacaacagtaactttgataaggacctaaaa
aacaggtacaaggaacccgaatatgaatttgatagtatcattgaaagtgaaggtgttctg
gatatcatgcaagatggttatggatttttgaggtcttctgactacaactacctatcatca
cctgatgacatctatgtttcccaatcccaaattaaattatttggattgaaaactggggat
accgttcttggtaatgtacgtccacccaaagagggagaaaaatatttccccctaatcaag
gtgaacaaaataaatggcttagatccacaaattgttagggacagagtgtcttttgagcat
ttgaccccattgtttccacaagaaaaatttaatcttgcagaaagacaaagcaccatatct
acacgaatcatagacttgttctcccctattggaaaaggacaaagaggaatgattgtagca
cagcctaaaacgggtaaaacgatgttattgaaagacatcgccaacggaattgcagcgaac
cacccagaagtttaccaaatcgttttattgatcgatgaacgtcccgaggaagtaactgat
atgcagcgtaacgtacggggagaagttattgcttctacctttgacaaggaggccacggaa
catgtaagggttgcaaacattgttttggaaaaagcaaaacgcttggtagaatgcggccat
gacgtggttatcctattagactccatcacacgtttggcaagagcatacaacacagttcaa
ccagcctctggtaaggttttgagtggtggtgtagatgccaatgccctgcacaaaccaaaa
agattctttggtgccgcccgtaatattgaaaatggtggatctttatccatcatcgcaaca
gcacttacggaaacaggttctaaaatggacgaggtgatctttgaagaattcaaaggaaca
ggtaacatggaacttcaattggatcgaaagatatctaaccgaagaatattcccagcaatt
gaccttacatcatcaagcacacgtagagatgatctattattggatgagaacaccatccaa
cgcatgtggatcttgcgcaaataccttgcagatatgaatccggtagaagcgatggaattc
attgagcaacgcatcaaacagaccaaaaacaacgaggaatttttattgaccatgaatcaa
taa
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