Sediminicola sp. YIK13: SB49_09575
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Entry
SB49_09575 CDS
T04145
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
syi
Sediminicola sp. YIK13
Brite
KEGG Orthology (KO) [BR:
syi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
syi03032
]
SB49_09575
03400 DNA repair and recombination proteins [BR:
syi03400
]
SB49_09575
Enzymes [BR:
syi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
SB49_09575
DNA replication proteins [BR:
syi03032
]
Prokaryotic type
DNA Topoisomerases
SB49_09575
DNA repair and recombination proteins [BR:
syi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
SB49_09575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Motif
Other DBs
NCBI-ProteinID:
ALM08020
UniProt:
A0A0S1SD32
LinkDB
All DBs
Position
complement(2151069..2153564)
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AA seq
831 aa
AA seq
DB search
MAKNLVIVESPAKAKTIEKFLGKDYKVESSFGHIADLPSKELGVDVENGFKPKYIVDSDK
KALVKKLKDLAQKADTIWLASDEDREGEAISWHLAEELNLDKAKTKRIVFNSITKAAIQR
AIENPREINYNLVNAQQARRVLDRLVGYELSPVLWKKIKPGLSAGRVQSVAVRLIVERER
DIEGFSPEASFKISAVFKTKEGTAFSAKMNKTFSSQEEAEAFLKQNIGANFSVANLDKKP
AKKSPAAPFTTSTLQQEASRKIYFSVGKTMQVAQRLYEAGLITYMRTDSVNLSKEALNEA
KDAIISNYGKEYSTVRNFTGKSKGAQEAHEAIRPTDMKIQSPSLERDQSKLYDLIWKRTL
ASQMSDAQLERTNVKISASTHKDEFSANGEVIKFDGFLKVYMEGIDDEDMAEEQDGMLPA
MKEGEALKNVNISATERFSRAPYRYSEASLVKKLEELGIGRPSTYAPTISTIQNRGYVEK
GTIEGTERNYMQLILKGDKLTSKELTEKVGSDKGKLVPTDIGMIVTDFLVDHFANILDYN
FTAKVEEDFDEIASGDEDWQKVMNNFYKDFHPNVIDVEENADRASGERVLGKDPKSGRQV
SVRLGRFGPMVQIGTVDDEEKPLFASLLPEHSLNTISFEEAMDLFKLPRKLGVYKGEEVE
ANVGRYGPYVRFGKTFVSMAAGESALDITMERAAELIQEKERADAPIAMYEEKEVTKGTG
RFGPFIKWDGMFINVNKKYDFDNLSKEDIVELIEAKKQKEIDKVVQDWPEEGIRIEKARW
GRHNILKGKIKVELSKDVDASKMKLEEAKALIEKKTPKKKTKAKAKPKAKK
NT seq
2496 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagaatttagtaattgtagagtcgcctgctaaagcaaaaacgatagagaaattt
ttagggaaagattataaggtagagtccagttttgggcatattgccgatctgccctctaaa
gagttgggagttgacgtggaaaatggttttaaaccaaaatatatagttgacagcgataag
aaggcactcgtaaaaaaactaaaggaccttgcccaaaaagcagacaccatctggttggcc
agtgatgaagatagggaaggagaagccatatcatggcatttggcagaagaactgaatttg
gacaaggccaagaccaaaagaattgtttttaactccatcaccaaagctgcaattcaacgg
gctattgagaatccacgtgagataaattataatctggtcaatgcccaacaagccagaagg
gtattggataggttggtaggttacgaactttctcctgtcctttggaaaaaaattaagcca
gggctatcagcgggaagggtgcaatctgttgccgtaagattgatcgtggaacgagaaagg
gatattgaaggcttttctccagaagcgtcctttaagatctccgcagtttttaaaactaaa
gaaggtaccgccttttctgcgaaaatgaataagacattttcctctcaagaagaagcagag
gcatttctaaaacaaaatatcggcgccaatttttctgtcgccaacctagataaaaagcct
gccaaaaaatctccggcagctccttttacaacatctactttacagcaggaagcttccagg
aagatctatttttccgtaggcaagaccatgcaggtagcccaacgtttgtatgaggcggga
ttgattacctatatgagaacggatagtgttaacctttccaaagaggctttgaatgaagcc
aaggacgcgattatcagtaattatggtaaggaatacagtacagtaagaaactttacgggc
aagagcaaaggggcacaagaggcccatgaggccattcgcccaaccgatatgaaaatacag
tcgccttccttggagcgtgaccaatcaaaactatatgatctaatctggaaacgtaccttg
gcctcccaaatgagtgatgcccaattggaacgtaccaatgtaaagatcagtgccagtacc
cataaagatgagttcagtgccaatggagaggtgattaagttcgatggtttcctaaaagta
tacatggaaggcattgatgatgaggatatggcggaggagcaagacggaatgctcccggca
atgaaagaaggggaggcgctaaaaaatgtcaatatatcggctacggaacgattttccaga
gccccttacaggtacagtgaagcctccttggttaaaaagttggaagaactgggaatcgga
agaccatctacctatgccccaacgatatccacgatacaaaatagggggtatgtagaaaaa
ggtactattgaaggcacggaaaggaactacatgcaattgatccttaaaggggataagtta
acttcaaaagaactgacggaaaaagtaggttcggataaagggaagttagtacccacagat
ataggaatgattgtcactgatttcttggtggaccattttgccaatattttggattacaac
tttaccgccaaggtagaagaagattttgatgagattgcatctggggatgaggattggcaa
aaggtgatgaacaatttctacaaggattttcatcccaatgtcatagacgttgaagaaaat
gcagatcgtgcgagcggggaacgcgttttaggaaaggatcccaaatcgggcaggcaggta
tccgttcgcttgggaaggtttgggcctatggtacagattggaaccgtcgatgacgaagaa
aagccattgtttgctagtctgttgccagagcatagcctgaataccatttcctttgaagag
gctatggatctctttaagttgccaaggaaattaggggtgtataaaggggaggaagtagaa
gccaatgtaggaagatatggcccttatgtgagatttggaaaaacatttgtgtctatggca
gcgggagaaagcgctttggatatcactatggaaagggcggcagagcttattcaagaaaaa
gaacgtgccgatgctcctattgccatgtatgaagaaaaagaggtgacaaaaggaactgga
cgctttgggccttttataaagtgggacggcatgttcatcaatgtgaacaagaaatatgat
ttcgacaacctttccaaagaagatattgttgagttgatagaagccaaaaagcaaaaagaa
atcgataaagtggtccaagattggccagaagaaggaatacgcattgaaaaggccagatgg
ggcagacacaatatcttgaaaggaaagatcaaagttgaactttccaaagatgtggacgct
tcgaaaatgaaactggaagaagccaaggcattgattgagaagaaaactcccaagaaaaaa
acaaaagcaaaagcgaaacctaaagcgaagaaataa
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