KEGG   Sediminicola sp. YIK13: SB49_09660
Entry
SB49_09660        CDS       T04145                                 
Name
(GenBank) penicillin-binding protein
  KO
K05515  penicillin-binding protein 2 [EC:3.4.16.4]
Organism
syi  Sediminicola sp. YIK13
Pathway
syi00550  Peptidoglycan biosynthesis
syi01100  Metabolic pathways
syi01501  beta-Lactam resistance
Brite
KEGG Orthology (KO) [BR:syi00001]
 09100 Metabolism
  09107 Glycan biosynthesis and metabolism
   00550 Peptidoglycan biosynthesis
    SB49_09660
 09160 Human Diseases
  09175 Drug resistance: antimicrobial
   01501 beta-Lactam resistance
    SB49_09660
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01011 Peptidoglycan biosynthesis and degradation proteins [BR:syi01011]
    SB49_09660
Enzymes [BR:syi01000]
 3. Hydrolases
  3.4  Acting on peptide bonds (peptidases)
   3.4.16  Serine-type carboxypeptidases
    3.4.16.4  serine-type D-Ala-D-Ala carboxypeptidase
     SB49_09660
Peptidoglycan biosynthesis and degradation proteins [BR:syi01011]
 Peptidoglycan biosynthesis and degradation
  DD-Transpeptidase (Class B PBP)
   SB49_09660
SSDB
Motif
Pfam: Transpeptidase PBP_dimer
Other DBs
NCBI-ProteinID: ALM08036
UniProt: A0A0S1SD48
LinkDB
Position
2169713..2171581
AA seq 622 aa
MNKFLLSAFIIIIGITFIGRLSYLQVFNNVGEKVSEDVAVKAIYDYPERGYIYDRNGELL
VANQPAYDVMVIPKDVKPLDTLEFCILLGLEKEQFIKNLNKAKIYSPRLPSVLVHQLSKE
DYARLQEKMRKYDGFYIQKRSLRYYATNSGANVLGYISEVNERDLANNPYYKQGELLGKT
GIEKEYENILRGKKGVKYIQKDRFNRDIGPYKNGALDTLPEQGKEIHVTLDKKLQEYGEL
LMQGKHGGIVAIEPNSGEILALISGPTYDPALLVGRERSKNYTKLYYDSISKPTYDRSLL
AETSPGSPFKILNALVALQEGAITPDTKIMCYHGFYVGSTKRGCHCGGGMRDMTSGIYNS
CNAYFAGTFRKIYEQFPTTDAGMDVWEKHMKSFGLGDFLGYDLPTGKRGRIPSKEYYDKW
YGDNRWSSSYIISNSIGQGEVSATPIQLANMTAAIANKGFYYTPHVLKKIDHEDISIPEF
IKAKHTTIDKKYFDPVINGMAMVYKQGTASRLQIPDIEIAGKTGTVENFTRIDGVKTQLT
DHSVFIAFAPVENPKIAIAVYIEHGYFGSRYAGHIASLLIEKYLKGEITRTDLEKRMLEK
NLEAEYAKPHSGQPFIINERVW
NT seq 1869 nt   +upstreamnt  +downstreamnt
atgaataagtttcttctttccgccttcattatcatcataggaatcacctttataggtagg
ctttcctacttacaggtatttaataatgttggggaaaaagtatctgaggatgtagcggtt
aaagccatttatgattacccagagaggggctatatctatgatagaaacggggagcttctt
gtagccaatcagccggcatatgatgtcatggtcattcccaaggatgtaaaacccctggac
acgttggaattctgcatccttttaggtctggaaaaagagcaattcattaaaaatttaaat
aaagccaaaatatactcccctagacttccctccgttctagtgcatcaattatccaaggag
gattatgcccgtctccaagaaaaaatgaggaaatacgatggtttttatattcaaaagaga
tcattgcgatattatgccaccaatagtggcgccaacgtattgggatatatcagcgaggtt
aatgaaagagacctggcgaacaacccttattacaaacaaggggagttacttggaaaaacg
ggaatagaaaaggaatatgaaaacatcttaagaggtaagaaaggtgtgaaatacattcaa
aaagaccgttttaacagggatattggcccctataaaaatggggcgttggacaccttacct
gaacagggaaaggaaatacatgtcaccttagacaagaaactacaggaatacggcgagctt
ttaatgcaaggaaagcatggtggtatagtagccattgaacctaattcaggagagattttg
gcactcatctccggccctacctatgacccagctttattggtaggaagagagcgatctaaa
aattacacgaaactgtattacgattccatttccaaaccaacctatgatagaagccttttg
gctgaaacgtcaccaggttctccatttaaaatcctgaacgcccttgttgccctgcaggaa
ggagctatcaccccggacaccaaaattatgtgctatcacggtttttatgtaggtagtaca
aaaagaggatgtcactgtggaggaggcatgagagatatgacctctggcatatacaattcc
tgtaatgcttattttgcgggcacatttaggaaaatttacgaacaatttccaaccacggat
gcaggtatggatgtttgggaaaaacacatgaagagttttggattgggtgattttctcgga
tatgatcttccaacgggcaaaagaggtagaattcccagcaaagagtactatgataagtgg
tatggagataatcggtggtcttcttcttatataatttccaattccattggacagggtgaa
gtttctgcaaccccaattcaattggccaatatgacggccgcaattgcgaataagggcttt
tactatactccccacgtgcttaagaaaattgaccatgaagatattagtatcccagaattt
ataaaagcaaagcacactacaatagacaaaaaatactttgatccggttattaacggaatg
gccatggtttacaagcaggggacagcgagcaggttacaaatacctgatatcgaaattgca
ggtaaaactggaactgtagagaatttcactagaatcgacggtgtaaaaacccaacttacg
gaccattctgtctttatcgcgtttgccccagtggaaaacccaaaaattgccatagccgta
tatattgaacacggatattttggctctagatatgccggacatattgcttcccttttaatt
gaaaaatacctcaagggtgaaattacaagaacagatttagaaaagagaatgttagagaaa
aatttggaagcagaatatgccaaaccgcatagcggccaaccctttataatcaacgagcgt
gtctggtaa

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