Sediminicola sp. YIK13: SB49_09660
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Entry
SB49_09660 CDS
T04145
Name
(GenBank) penicillin-binding protein
KO
K05515
penicillin-binding protein 2 [EC:
3.4.16.4
]
Organism
syi
Sediminicola sp. YIK13
Pathway
syi00550
Peptidoglycan biosynthesis
syi01100
Metabolic pathways
syi01501
beta-Lactam resistance
Brite
KEGG Orthology (KO) [BR:
syi00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
SB49_09660
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
SB49_09660
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
syi01011
]
SB49_09660
Enzymes [BR:
syi01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
SB49_09660
Peptidoglycan biosynthesis and degradation proteins [BR:
syi01011
]
Peptidoglycan biosynthesis and degradation
DD-Transpeptidase (Class B PBP)
SB49_09660
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Transpeptidase
PBP_dimer
Motif
Other DBs
NCBI-ProteinID:
ALM08036
UniProt:
A0A0S1SD48
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Position
2169713..2171581
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AA seq
622 aa
AA seq
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MNKFLLSAFIIIIGITFIGRLSYLQVFNNVGEKVSEDVAVKAIYDYPERGYIYDRNGELL
VANQPAYDVMVIPKDVKPLDTLEFCILLGLEKEQFIKNLNKAKIYSPRLPSVLVHQLSKE
DYARLQEKMRKYDGFYIQKRSLRYYATNSGANVLGYISEVNERDLANNPYYKQGELLGKT
GIEKEYENILRGKKGVKYIQKDRFNRDIGPYKNGALDTLPEQGKEIHVTLDKKLQEYGEL
LMQGKHGGIVAIEPNSGEILALISGPTYDPALLVGRERSKNYTKLYYDSISKPTYDRSLL
AETSPGSPFKILNALVALQEGAITPDTKIMCYHGFYVGSTKRGCHCGGGMRDMTSGIYNS
CNAYFAGTFRKIYEQFPTTDAGMDVWEKHMKSFGLGDFLGYDLPTGKRGRIPSKEYYDKW
YGDNRWSSSYIISNSIGQGEVSATPIQLANMTAAIANKGFYYTPHVLKKIDHEDISIPEF
IKAKHTTIDKKYFDPVINGMAMVYKQGTASRLQIPDIEIAGKTGTVENFTRIDGVKTQLT
DHSVFIAFAPVENPKIAIAVYIEHGYFGSRYAGHIASLLIEKYLKGEITRTDLEKRMLEK
NLEAEYAKPHSGQPFIINERVW
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgaataagtttcttctttccgccttcattatcatcataggaatcacctttataggtagg
ctttcctacttacaggtatttaataatgttggggaaaaagtatctgaggatgtagcggtt
aaagccatttatgattacccagagaggggctatatctatgatagaaacggggagcttctt
gtagccaatcagccggcatatgatgtcatggtcattcccaaggatgtaaaacccctggac
acgttggaattctgcatccttttaggtctggaaaaagagcaattcattaaaaatttaaat
aaagccaaaatatactcccctagacttccctccgttctagtgcatcaattatccaaggag
gattatgcccgtctccaagaaaaaatgaggaaatacgatggtttttatattcaaaagaga
tcattgcgatattatgccaccaatagtggcgccaacgtattgggatatatcagcgaggtt
aatgaaagagacctggcgaacaacccttattacaaacaaggggagttacttggaaaaacg
ggaatagaaaaggaatatgaaaacatcttaagaggtaagaaaggtgtgaaatacattcaa
aaagaccgttttaacagggatattggcccctataaaaatggggcgttggacaccttacct
gaacagggaaaggaaatacatgtcaccttagacaagaaactacaggaatacggcgagctt
ttaatgcaaggaaagcatggtggtatagtagccattgaacctaattcaggagagattttg
gcactcatctccggccctacctatgacccagctttattggtaggaagagagcgatctaaa
aattacacgaaactgtattacgattccatttccaaaccaacctatgatagaagccttttg
gctgaaacgtcaccaggttctccatttaaaatcctgaacgcccttgttgccctgcaggaa
ggagctatcaccccggacaccaaaattatgtgctatcacggtttttatgtaggtagtaca
aaaagaggatgtcactgtggaggaggcatgagagatatgacctctggcatatacaattcc
tgtaatgcttattttgcgggcacatttaggaaaatttacgaacaatttccaaccacggat
gcaggtatggatgtttgggaaaaacacatgaagagttttggattgggtgattttctcgga
tatgatcttccaacgggcaaaagaggtagaattcccagcaaagagtactatgataagtgg
tatggagataatcggtggtcttcttcttatataatttccaattccattggacagggtgaa
gtttctgcaaccccaattcaattggccaatatgacggccgcaattgcgaataagggcttt
tactatactccccacgtgcttaagaaaattgaccatgaagatattagtatcccagaattt
ataaaagcaaagcacactacaatagacaaaaaatactttgatccggttattaacggaatg
gccatggtttacaagcaggggacagcgagcaggttacaaatacctgatatcgaaattgca
ggtaaaactggaactgtagagaatttcactagaatcgacggtgtaaaaacccaacttacg
gaccattctgtctttatcgcgtttgccccagtggaaaacccaaaaattgccatagccgta
tatattgaacacggatattttggctctagatatgccggacatattgcttcccttttaatt
gaaaaatacctcaagggtgaaattacaagaacagatttagaaaagagaatgttagagaaa
aatttggaagcagaatatgccaaaccgcatagcggccaaccctttataatcaacgagcgt
gtctggtaa
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