Sediminicola sp. YIK13: SB49_10480
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Entry
SB49_10480 CDS
T04145
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
syi
Sediminicola sp. YIK13
Pathway
syi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
syi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SB49_10480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
syi03400
]
SB49_10480
Enzymes [BR:
syi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SB49_10480
DNA repair and recombination proteins [BR:
syi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SB49_10480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
ImmE5
Motif
Other DBs
NCBI-ProteinID:
ALM08185
UniProt:
A0A0S1SC99
LinkDB
All DBs
Position
2362431..2365808
Genome browser
AA seq
1125 aa
AA seq
DB search
MSKKIAPQLFSQSLQLQKLRKSIADPQIHIRLKGLTGSALSFAVKEAFHDAGAPFLLILN
DKEEAAYHLNDLEQLVGESDVLFYPGSYRRPYQIEETDNANVLLRAEVLNRINSRKKPAI
IVTYPDALFEKVVTRKELDKNTLKIKLEDTLSLDFLNEVLFEYKFKRVDFVTEPGEFSVR
GGIVDVFSFSHDEPYRIEFFGDEVDSIRTFDVETQLSTLKVKKITIIPNVENKFLDESRE
SFLKYISANTVVFAKNLDLLFDRMDSLFAKAEEAFKTLSEDIKHGEPKELFVSSSFLKEQ
LNDYSLIEVGTQFNKNLRSSPPEIITFNTKPQPSFNKKFDLLIENLNDNNDKGYNNYIFC
ATDQQAKRFHDIFDEVGKQVHYQTVVFPLYQGFIDDDLKIVIYTDHQIFERYLKFHLKNG
YAKKQAITLKDLNKLEIGDYVTHIDHGIGKFGGLQKIDVEGKKQEAIKLVYGERDILYVS
IHSLHKISKFNGKDGKEPKIYKLGSGAWKKVKEKAKSRVKQIAFNLIKIYAKRRLEKGFQ
YAPDSYLQHELEASFIYEDTPDQSKSTEDIKRDMESERPMDRLVCGDVGFGKTEVAIRAA
FKAVDNGKQVAVLVPTTILAFQHFKTFNERLKEMPVTVEYLNRFRTAKEKKDTLERLGEG
KVDIIIGTHQLVNKKVQFKDLGLLIVDEEQKFGVAVKDKLKSIKENVDVLTLTATPIPRT
LQFSLMAARDLSVINTAPPNRYPIESEVIRFNEETIRDAISYEIQRGGQVFFIHNRIENI
KEVAGMIQRLVPDAKIGIGHGQLDGKKLESLMLAFMNNEFDVLVSTTIVESGLDVSNANT
IFINNANNFGLSDLHQMRGRVGRSNKKAFCYFITPPYDVMTNDARKRIQALEQFTDLGSG
FNIAMKDLEIRGAGDLLGGEQSGFINDIGFDAYQKILNEAIEELKENEFKDLYEEIGGNA
REKVFVKDTQIDADFELLFPDDYINNVTERLNLYTELNEIKDEAGLHKFETELVDRFGEL
PSQAEDLLNSVRIKWIANSIGLEKVVLKQGKMIGYFISDQQSAFYRSTSFTQVLQFVQTN
AHLCKIKEKQTRGGLRLLLVFENIKSLDKALKAFQPFAKTPEPVS
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
ttgagtaaaaaaattgcacctcaacttttttcacagtctctgcaactccagaaactgcga
aaatctattgccgatccccaaatacatatcagattaaaaggccttaccggatctgccctt
tcctttgcggttaaagaggcattccacgatgccggggctccctttctattgatcttaaac
gacaaggaagaagctgcctaccatctcaatgacctcgagcaactggtaggagaatcggat
gtgctattttatcctggaagctatagaagaccctatcagatagaggaaacggacaatgcc
aatgtgttgctacgtgctgaagttctcaaccgtatcaattccagaaaaaagcccgcaatt
attgtcacctatcctgacgccctgtttgaaaaggtggtcacccgaaaggagctcgacaag
aatacccttaaaataaaattagaggacaccctatcattggatttcctgaacgaagtgctc
tttgagtacaagttcaaaagggtcgattttgtaaccgaacctggggaattttcggtaagg
ggtggtattgtggatgtcttttccttttcccatgacgagccctaccgcattgaatttttt
ggtgatgaggtagacagtattagaacctttgatgtggagacgcagctatctacgcttaag
gtcaaaaaaatcaccatcatccccaatgtagaaaacaagtttctggacgagtccagggaa
agtttcctaaaatatatatccgccaatacggtggtctttgctaaaaacttggaccttcta
ttcgaccgtatggactccctttttgccaaggcagaagaagcttttaaaacactttcggaa
gatatcaaacatggggaaccaaaggaattattcgtaagttcctcctttctaaaagaacaa
ttgaatgattacagtttaattgaggttggcacccaatttaacaagaacctgagatcaagt
ccacctgaaataatcacatttaataccaaaccacaaccctctttcaacaagaaatttgat
ctgttgattgaaaacctcaacgataataatgacaagggatataacaactatatcttttgt
gccacggaccaacaggccaagcgcttccacgacatttttgatgaagtaggcaaacaggtg
cactaccagacagtggtattcccattgtaccaaggttttatagacgatgatttaaaaata
gtgatctatacggaccaccaaatatttgaaagatatctaaagttccaccttaaaaatggt
tatgccaaaaaacaggccattaccctcaaggatctcaacaaattggaaattggggattac
gtaacccatatagaccatggtattgggaaattcggaggcctacagaaaattgatgttgaa
ggcaaaaagcaagaggccattaaactggtttacggagagcgggatatcctttatgtgagt
atccattcccttcacaaaatttcaaagttcaatggcaaagacggcaaggaacccaaaatt
tacaaattgggatctggggcctggaagaaggtaaaggaaaaggcaaaatcacgcgtaaaa
caaatcgccttcaacctcattaaaatttatgcaaagcgaaggctggaaaaaggatttcaa
tatgccccggacagttatctacagcacgaattggaagcctcgtttatttacgaggacacc
cctgatcagagcaaatctacagaggatattaaaagagatatggaaagcgaacgtccaatg
gaccgcttggtatgcggagatgtagggtttggcaaaacagaagtggccatacgtgccgcc
tttaaagcggtggacaatggcaaacaggtcgctgtactggttcctaccaccattctggca
tttcaacattttaagacctttaatgaacgattaaaggaaatgccagtaactgtagaatat
ctgaacaggttccgaacggcaaaagaaaagaaagacaccctggaacggttgggggaaggg
aaagtggatattatcataggcacccaccaattggtaaacaaaaaggtacagtttaaagat
ctgggtctattaatagttgatgaagaacaaaaatttggagttgccgtaaaggacaagctt
aagtccatcaaggaaaatgtggatgtgcttacccttacagccacacctatccctaggacc
ctacagttcagtttgatggcggccagggatctctcggtcataaatacggctccacccaac
agatatccaatagaaagtgaggtcatccgctttaatgaagaaacgattagggatgcgatc
agttatgagatacaacgaggcggacaagtatttttcattcataaccgaatagagaacatc
aaggaagtagctggtatgatacaacgtctggtcccagatgccaaaattggtattggccat
gggcaattggacggtaaaaagttggaatcacttatgctggcctttatgaacaatgaattt
gatgtacttgtttccacaaccattgtagaaagtgggttggatgtatccaatgcgaatacc
atcttcattaataacgccaataattttggtttgagcgacctgcatcaaatgcgaggacgt
gtgggccgaagcaataaaaaggccttttgttatttcattacccctccttatgatgtgatg
acaaatgatgcccgtaagcgcatccaggcgttggaacaattcaccgatctgggcagtggt
tttaatattgccatgaaagatttggagatcaggggtgccggagaccttttgggaggggaa
caaagtggatttatcaatgatattggatttgatgcttaccaaaaaatcctgaacgaagcc
attgaggagctgaaagaaaacgagtttaaggatttgtatgaagaaatcggtggaaacgcc
agggaaaaagtctttgtgaaagacacccagatagatgccgattttgagcttctttttcca
gatgactatatcaataacgtaactgaacgtttaaatctatacacggagctaaacgaaata
aaagatgaagctggactccataaattcgaaactgaacttgtagaccgttttggggagttg
ccctcacaggccgaagaccttttgaactccgtacgtatcaaatggattgccaatagtata
ggccttgaaaaagtggtcctaaaacagggcaagatgatcgggtattttatttctgaccag
cagtcggccttttaccgaagcacctcctttacccaagtacttcaatttgtgcagacaaat
gcccatttgtgcaaaataaaggaaaaacaaacccgtggcggtcttcgtctattgttggtt
tttgaaaatataaagtccttggacaaagcattaaaagcatttcaaccttttgcaaaaaca
ccggaacctgtttcctaa
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