Sediminicola sp. YIK13: SB49_12135
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Entry
SB49_12135 CDS
T04145
Name
(GenBank) tRNA uridine 5-carboxymethylaminomethyl modification protein
KO
K03495
tRNA uridine 5-carboxymethylaminomethyl modification enzyme
Organism
syi
Sediminicola sp. YIK13
Brite
KEGG Orthology (KO) [BR:
syi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
syi03016
]
SB49_12135
03036 Chromosome and associated proteins [BR:
syi03036
]
SB49_12135
Transfer RNA biogenesis [BR:
syi03016
]
Eukaryotic type
tRNA modification factors
Other tRNA modification factors
SB49_12135
Prokaryotic type
SB49_12135
Chromosome and associated proteins [BR:
syi03036
]
Prokaryotic type
Chromosome partitioning proteins
Other chromosome partitioning proteins
SB49_12135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GIDA
SAM_GIDA_C
GIDA_C_1st
FAD_oxidored
Pyr_redox_2
DAO
FAD_binding_2
Pyr_redox
AlaDh_PNT_C
HI0933_like
VirE2
Motif
Other DBs
NCBI-ProteinID:
ALM08478
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Position
2733196..2735064
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AA seq
622 aa
AA seq
DB search
MFDKEYDVIVVGAGHAGAEAAAAAANLGSKTLLVTMNLQTIGQMSCNPAMGGIAKGQIVR
EIDALGGYSGIVSDKSAIQFKMLNKSKGPAMWSPRTQNDRMRFAEEWRIALENTPNVDFY
QEMVSGLLVEGTKVVGVKTSLGLEIRSRAVVLTNGTFLNGLIHIGDKQFGGGRSGEKAST
GITEQLVSLGFESGRMKTGTPPRVDGRSLDYSKMILQPGDAIPEKFSYTPTSPLKIQRDC
HMTHTSQLVHDLLKEGFDRSPMFNGRIKSLGPRYCPSIEDKINRFADKDSHQLFVEPEGW
NTVEVYVNGFSTSLPEDVQYKALKSVVGFENVKFFRPGYAIEYDYFQPTQLKHTLETKLI
NNLYFAGQINGTTGYEEAASQGLMAGINAHLKINEKDPFILNRDEAYIGVLVDDLITKGT
EEPYRMFTSRAEYRTLLRQDNADLRLTPKSYAIGLADEDRLRRMEEKETNSNKFIEFFRE
TSVKAEDINPILESVGSAPVNQSGKMFKVFSRPNITMDHMLQLETVSNFVHEENFDRNVL
EQAEIQVKYSGYIAKEKNNADKLQRLENIKIPENFDYSKLKSLSFEAREKLNAIRPVTIS
QASRISGVSPSDISVLLVFMGR
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgtttgataaagaatacgatgttattgtagttggcgctgggcatgcaggagcagaggcc
gcagcagcagctgcgaacctgggctccaaaactcttttggtaaccatgaaccttcaaaca
attggacaaatgtcctgcaaccctgccatgggtggtattgcaaaaggccagattgtaaga
gaaatagatgccttaggtggctatagcggtattgtcagtgacaaatccgccatacaattt
aaaatgctcaacaaatccaaaggacctgcaatgtggagtcctagaacacagaacgacaga
atgcgttttgcggaagaatggagaatagcactggagaacacccctaatgttgatttctat
caagaaatggtatcggggcttttagtagaaggcaccaaggtagtaggggtaaaaacctcc
ttaggcttggaaatacgaagtagggcagtagtactcaccaacggaaccttcttaaacggt
ttgatccatattggtgacaaacaatttggaggaggacgatcaggagaaaaagcctccact
ggtattacagaacaattggtgtcccttggttttgaaagcggccgtatgaaaacgggaacc
cctcctagagtagatggtagatcattggactattccaaaatgatcctacaacctggagat
gctatcccagaaaaattttcatatacccccacttcacctttaaagattcaaagggactgt
cacatgacccataccagtcaattggttcatgatctactcaaagaagggtttgaccggtcc
ccaatgtttaatggaagaatcaaaagtttgggaccaagatactgtccgtccattgaagac
aagataaatcgctttgcagataaggacagccatcagctttttgttgagccagaaggatgg
aacactgtagaagtatatgtgaacggattttccacctccttgccagaagacgtacaatac
aaagcgctaaaatctgttgtcggttttgaaaacgtaaaattctttagacctgggtatgcg
atagaatacgattactttcagcctactcaactaaagcacaccctagaaaccaaactgata
aacaacctgtattttgccggacaaataaatggaactaccggatacgaagaagccgcttcc
caaggtttaatggcaggaattaacgcccatctaaaaatcaacgaaaaggacccatttatt
ctaaatagggacgaagcatatatcggtgtcctggtcgatgatttaattactaaaggaacg
gaggagccctatcgtatgtttacttcaagagcagagtacagaactcttttgagacaagac
aacgcagatttaagactgacgccaaaaagttatgctattggactagcagacgaagatcga
ttaaggagaatggaagaaaaagaaaccaactccaataaatttattgaattctttagagag
accagtgtaaaagctgaagacatcaatccaattctagagagcgttggttcagcacctgta
aaccaatcggggaagatgtttaaagttttttccagacccaatattaccatggaccacatg
ttacaactagaaaccgtttctaattttgttcatgaagagaactttgataggaacgtattg
gaacaggcggagattcaagtaaaatattctggctatatcgcaaaagagaagaacaatgcc
gacaaactacaacgtttggaaaacatcaaaattcctgagaattttgattactccaaatta
aaatcactttcctttgaggctagagaaaaactaaatgcgatacgacctgtaacgatttcc
caggcatctcgtatcagtggtgtttctccaagcgacataagcgtcctgttagtgtttatg
ggtaggtaa
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