KEGG   Sediminicola sp. YIK13: SB49_14605
Entry
SB49_14605        CDS       T04145                                 
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
syi  Sediminicola sp. YIK13
Pathway
syi03030  DNA replication
syi03410  Base excision repair
syi03420  Nucleotide excision repair
syi03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:syi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    SB49_14605
   03410 Base excision repair
    SB49_14605
   03420 Nucleotide excision repair
    SB49_14605
   03440 Homologous recombination
    SB49_14605
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:syi03032]
    SB49_14605
   03400 DNA repair and recombination proteins [BR:syi03400]
    SB49_14605
Enzymes [BR:syi01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     SB49_14605
DNA replication proteins [BR:syi03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     SB49_14605
DNA repair and recombination proteins [BR:syi03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     SB49_14605
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     SB49_14605
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N DNA_pol_A_exo1 5_3_exonuc DNA_polI_exo1 HHH_2 RNase_H_2
Other DBs
NCBI-ProteinID: ALM08887
UniProt: A0A0S1SEF2
LinkDB
Position
complement(3278132..3280969)
AA seq 945 aa
MAEQKRLFLLDAYALIFRGYYALIKNPRINSKGMDTSAVMGFVNSLFDVIKREKPDHLAV
CFDKGGSTERTEMFADYKANRDETPDAIRQAVPYIQDILKAMHIPVVELYGLEADDIIGT
LAKQAEKEDYKVFMVTPDKDFGQLVSENIFMYRPARMGNGIEIWGIPEVKERFGVERPEQ
VIDYLGMMGDASDNIPGLPGVGDKTAKKFIAEFGSMENLLANTDKLKGKMKEKIQENKEL
GILSKKLATICVTCDVTFNAKDYELSMPDSEKVQELFEELEFRRLKDQFLKLFSTEEETT
TTPVSSTPTAKKQAQEAGGGQFSLFGGDVNQPSGTLESVSSRKTIKDVPHIYQSVAPGMA
MKLFIQNLLKQTSVCFDTETTSLNPLEAQLVGIAFSWEPGKGFYIPFPEEKEEAQEIIEQ
LRPFFESEKIEKIGQNLKYDIKVLDKYKIKVKGKCFDTMLAHYLINPDMRHNMDVLAETY
LNYTPISITELIGKKGKNQMSMREIPLDKQTEYAVEDADITFQLAQHFRPELAEAKTEDL
FNDIEIPLLHVLADMELEGIKLDTEFLNSLSKDLDNDIKNLESKIYEDAGEEFNIGSPKQ
LGEILFDKMKLVDKPKKTKTGQYSTAEDVLSYLAKDHAIIQHVLEYRGLSKLKSTYIDAL
PGQVEPTTGRVHTDYMQTVAATGRLSSNNPNLQNIPIRTERGRQVRKAFVPRNEDYILLA
ADYSQIELRIIAALSQETTMIEAFKNGEDIHASTASKVFNVPLEEVTREQRSNAKTVNFG
IIYGVSAFGLSNQTDLSRGEAKDLIDTYYKTYPKLRNYISEQIEFAREHGYVQTVLGRRR
YLKDINGSNAVVRGAAERNAVNAPIQGSAADIIKIAMINIHKKLEEGNYKTKMLLQVHDE
LVFDVYKPELEELKTMIKTEMESAYTLSVPLDVEMGVGDNWLQAH
NT seq 2838 nt   +upstreamnt  +downstreamnt
atggcagaacaaaaaagactttttttacttgatgcttatgcattgattttccgaggctac
tatgccttgatcaaaaatccaagaataaattccaaggggatggacacctctgccgtaatg
ggctttgtcaattccctttttgatgttatcaaaagagaaaaaccagatcatttggcggtt
tgttttgataaggggggaagcaccgaacggacagaaatgtttgcagactacaaggccaat
agggatgaaaccccagatgccataaggcaggccgtaccctatatccaagatatcctaaaa
gctatgcacatccctgttgtggagctttatggattggaagcagatgatattattggcacc
ttggccaaacaggcggaaaaagaggattataaggtattcatggtgaccccggataaggat
tttgggcaactggtttcagaaaacatttttatgtacagacctgctagaatgggtaacggc
atagaaatttgggggattccggaagtaaaagaacgatttggagtggagcgccccgaacag
gtcatagactatttgggaatgatgggcgatgccagtgacaatattcctggactcccaggt
gttggggacaaaacggccaaaaaattcattgcagagttcggctctatggaaaacctttta
gcgaatacggataagctaaagggcaaaatgaaggagaaaatccaagaaaacaaggaattg
gggatcctatccaagaagctggcaaccatttgcgttacctgtgatgtaacttttaatgcc
aaggactatgaattgtccatgcccgatagcgaaaaagtccaagagctctttgaagaattg
gaatttagaaggctaaaagaccagttcttgaagttattctctaccgaggaagaaaccaca
accactccagtaagcagtacccccactgcaaaaaagcaagcacaagaggccggaggcgga
cagttttcgctgtttggcggggacgtgaaccaaccttcgggaacactggaatcggtatcg
agcagaaagaccatcaaggatgttccacatatttaccaaagtgtagcaccgggaatggcg
atgaaattatttattcagaatttgttaaagcagacctcggtctgttttgacacggaaaca
acctcattaaaccctttggaagcacaattggttgggatcgcctttagttgggaacctggc
aaaggcttttatattccgtttccagaagaaaaggaagaggcccaggaaatcatagaacaa
ttaagacctttctttgaatccgaaaaaatcgaaaaaataggacagaaccttaaatatgac
atcaaggttctggataagtacaagataaaggtaaagggcaaatgctttgataccatgctg
gcgcattaccttatcaatccagacatgaggcacaacatggacgtattggccgagacttat
ttaaactacacccccatatccattaccgaattaattggaaagaaagggaagaaccagatg
tccatgagggaaatccctctggataagcaaacagaatacgccgtggaagatgcggatatt
acctttcaactggctcaacattttagaccagaacttgccgaggccaaaacagaagatctt
ttcaatgatatagaaatccctcttttgcacgtcctggcagatatggagttggaaggaatt
aaattggataccgaatttttaaattccctgtccaaagacctggacaacgatatcaagaac
ctggaatcgaaaatttatgaagatgctggggaggagttcaatattggctccccaaagcaa
ttgggagaaattctttttgataaaatgaaactggtagacaagcctaagaaaaccaaaacc
gggcaatactccaccgcagaagacgtactttcctatcttgccaaagaccacgccatcatc
caacatgttctggagtataggggactttccaaactaaagagtacctacatagatgcccta
cccgggcaagtggaaccaactacgggtagagtacatacagattatatgcagaccgtagct
gctacaggaagactgagcagtaacaaccctaaccttcagaacatcccaatacgcacggaa
aggggaagacaggtccgcaaggcttttgttccaaggaatgaagattatattttattggcc
gcggattattcccagatagaactacgcatcattgcggcactcagtcaagaaaccaccatg
atcgaggcctttaaaaatggagaggatattcacgcctccacagcctcaaaggttttcaat
gtacccttggaggaagtgaccagggaacagcgtagcaacgccaaaactgtcaactttgga
attatttatggggtatccgcgtttggacttagcaatcagacagacctatctagaggtgag
gccaaggacctgatagacacttattacaaaacctatccaaaattacgcaactacatcagc
gaacagatagaatttgccagggaacacggatatgttcaaaccgttttgggcagaagaaga
tatctaaaggacatcaacggtagcaatgccgtcgtaaggggtgccgcggaacgcaatgcc
gtaaatgcccccatacaaggaagcgctgcggatatcatcaaaatagccatgatcaatatc
cacaaaaagctggaagaaggcaattacaagactaaaatgttgttgcaggttcatgatgaa
ttggtctttgatgtatacaaacctgaattggaagaactaaagaccatgattaaaaccgaa
atggaaagcgcctatacgctatccgtgcccttggatgtggaaatgggagttggtgacaac
tggttgcaggcacattaa

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