Synechocystis sp. PCC 6714: D082_25480
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Entry
D082_25480 CDS
T03386
Symbol
crhR
Name
(GenBank) Cold-shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
syj
Synechocystis sp. PCC 6714
Pathway
syj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
syj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D082_25480 (crhR)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
syj03019
]
D082_25480 (crhR)
03009 Ribosome biogenesis [BR:
syj03009
]
D082_25480 (crhR)
Enzymes [BR:
syj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
D082_25480 (crhR)
Messenger RNA biogenesis [BR:
syj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D082_25480 (crhR)
Ribosome biogenesis [BR:
syj03009
]
Prokaryotic type
rRNA helicases
D082_25480 (crhR)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
CMS1
AAA_19
Cas3-like_C_2
AAA_30
Flavi_DEAD
Fe-ADH
Motif
Other DBs
NCBI-ProteinID:
AIE75077
UniProt:
A0A068N4R5
LinkDB
All DBs
Position
complement(2505598..2507082)
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AA seq
494 aa
AA seq
DB search
MTNTLTSTFADLGLSEKRCQLLADIGFESPTQIQTEAIPLLLSGRDMLAQSQTGTGKTAA
FALPLMDRIDPEGDLQALILTPTRELAQQVAEAMKDFSHERRLFILNVYGGQSIERQIRS
LERGVQIVVGTPGRVIDLIDRKKLKLETIQWVVLDEADEMLSMGFIDDVKTILRKTPPTR
QTACFSATMPREIKELVNQFLNDPALVTVKQTQSTPTRIEQQLYHVPRGWSKAKALQPIL
EMEDPESAIIFVRTKQTAADLTSRLQEAGHSVDEYHGNLSQSQRERLVQRFRDGKIKLVV
ATDIAARGLDVNNLSHVVNFDLPDNAETYIHRIGRTGRAGKTGKAIALVEPIDRRLLRSI
ENRLKQQIEVCAIPNRSQVEAKRIEKLQEQLKEALTGERMASFLPLVRELSDEYDAQAIA
AAALQMIYDQSCPQWMKTDWEVPEVDFNKPVLRRGRNAGGGGGQNKSGGGYQGKPGKPRR
SSGGRRPAYSDRQQ
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgactaatactttgactagtactttcgccgaccttggtctttctgaaaaacgttgtcaa
ctcttggccgacattggctttgagtcccccacccaaattcaaactgaagccattcccctg
cttctgagcggccgggacatgctcgcccaatcccaaaccggcacgggtaaaaccgccgcc
tttgccctacctttgatggaccgtattgatcccgagggggatttgcaagccttaattttg
acccccacccgggaattagcccagcaggtggcggaggcaatgaaggacttttcccatgag
cgccgtctgtttattttgaatgtttacggtggccagtccatcgagcgacaaattcgcagc
ctggagcggggggtacaaattgtagtagggactcctggacgggtgattgacctaattgac
cgcaaaaaactcaaactggaaaccatccaatgggtggtgctggatgaagcggacgaaatg
ctgagcatgggcttcattgacgatgtgaaaaccattctgcgtaaaactccccccaccagg
cagactgcttgtttctccgccaccatgccccgggaaatcaaagagttggtcaaccaattt
ttaaatgatcccgccctggtgaccgttaaacagacccaatctacccccacccgcattgag
cagcagctttaccacgtgccccggggttggtctaaggctaaggcattgcaaccaattttg
gaaatggaagatcccgaatccgccattatctttgttcgtaccaagcaaaccgccgccgac
ctcaccagccgtttacaggaagcgggccatagcgtggacgagtaccatggcaacctgagc
caatcccaacgggagcgtttggtgcagcgttttcgcgatggcaaaatcaagctggtggtg
gctacggacattgccgcccggggtttagatgttaataacctcagccatgtggtcaatttc
gatttgcccgataacgctgaaacctatattcaccgcattggccgcacgggacgggctggt
aaaaccggtaaggcgatcgccctggtggaacccattgaccgtcgtttactgcgctccatt
gaaaaccgtctcaaacagcaaattgaggtttgtgctatccctaaccgttcccaggtggaa
gctaagcggattgaaaaactgcaggaacagctcaaagaggcattaaccggtgagcgaatg
gcttcctttttgcccttggtacgggaattgagtgatgaatacgatgcccaggcgatcgcc
gctgctgccctgcaaatgatctatgaccaaagttgcccccaatggatgaaaaccgattgg
gaagtgccggaagttgatttcaacaagcccgttcttcgtcgtggccgcaatgctggtggt
ggcggtggccagaacaaaagtgggggtggctaccaaggtaaaccgggcaaaccccgccgc
tccagtggtggccgtcgtcctgcttatagcgatcgccaacaataa
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