Synechocystis sp. PCC 6714: D082_29690
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Entry
D082_29690 CDS
T03386
Symbol
sigB
Name
(GenBank) Cyanobacteria-specific RpoD-like sigma factor, type-3 / Group 2 RNA polymerase sigma factor
KO
K03087
RNA polymerase nonessential primary-like sigma factor
Organism
syj
Synechocystis sp. PCC 6714
Brite
KEGG Orthology (KO) [BR:
syj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
syj03021
]
D082_29690 (sigB)
Transcription machinery [BR:
syj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
D082_29690 (sigB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r4_2
DUF2316
HTH_25
HTH_20
Tipalpha
DUF6765
Motif
Other DBs
NCBI-ProteinID:
AIE75497
UniProt:
A0A068N5W9
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All DBs
Position
2949894..2950880
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AA seq
328 aa
AA seq
DB search
MPTANLSSPTSTPTFTADMVRSYLHEIGRVPLLTHEQEIILGKQVQQMMALLGQRTALAE
KLGRDPSDAEWAEATDSSVAKLQRYLSQGERAKRKMIEANLRLVVAIAKKYQKRNMEFLD
LIQEGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKI
KKTQRELSQQLGRSATPAEVAQALEIDPSQIREYLSLSRQPISLDVRVGDNQDTELSELL
EDEGASPDAYITQESMRQDLQNLLAELTPQQQAVLTMRFGLNDGQELSLAKIGQHLNISR
ERVRQLENQALTQLKRRRANMAEYIIAS
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atgcccaccgccaatctctcctcccctacttccacccccactttcaccgccgatatggtg
aggtcctatctccatgaaattggtcgggttcccctattaacccacgagcaagaaatcatc
ctcggtaaacaagttcaacaaatgatggctctgctggggcagagaacggccttggccgaa
aagctgggcagagatccctccgatgcggaatgggccgaagccactgattcgtccgtagcc
aagttacaacgctacctcagccagggggaacgggccaagcggaaaatgattgaggccaat
ctccgcctagtggtggcgatcgccaagaaatatcagaagcggaacatggaatttttggat
ttaatccaagaaggaagtttggggctggaacggggtgtagaaaaatttgatcccactaag
ggctacaaattctccacctatgcctactggtggatccgtcaggccattacccgggcgatc
gcccaacagggccgcaccatccgcctaccgatccatatcaccgaaaagttaaacaaaatc
aaaaaaacccagcgtgaactctcccagcagttgggccgcagtgccacccccgccgaagtg
gcccaggcattagaaattgacccgagccaaattcgggaatacctcagcctctcccgccaa
cctatttccctggatgtgcgggtgggggacaaccaggatacggaattgtcagaattgttg
gaggatgaaggggcttcccccgatgcctatatcacccaagaatccatgcgccaggatttg
caaaatctgttggcggaactgaccccccaacaacaggcggtgttaaccatgcgctttggg
cttaacgatggccaggagctttctttggcaaaaattggccagcatctcaacatcagccgg
gaaagagtgcgtcagttagaaaaccaagcccttacccaactgaagcgccgacgggctaat
atggcagagtatattatcgccagttag
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