Shewanella yunxiaonensis: KDN34_00060
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Entry
KDN34_00060 CDS
T07775
Symbol
fadB
Name
(GenBank) fatty acid oxidation complex subunit alpha FadB
KO
K01825
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:
1.1.1.35
4.2.1.17
5.1.2.3
5.3.3.8
]
Organism
syk
Shewanella yunxiaonensis
Pathway
syk00071
Fatty acid degradation
syk00280
Valine, leucine and isoleucine degradation
syk00310
Lysine degradation
syk00362
Benzoate degradation
syk00380
Tryptophan metabolism
syk00410
beta-Alanine metabolism
syk00640
Propanoate metabolism
syk00650
Butanoate metabolism
syk00907
Pinene, camphor and geraniol degradation
syk00930
Caprolactam degradation
syk01100
Metabolic pathways
syk01110
Biosynthesis of secondary metabolites
syk01120
Microbial metabolism in diverse environments
syk01200
Carbon metabolism
syk01212
Fatty acid metabolism
Module
syk_M00087
beta-Oxidation
Brite
KEGG Orthology (KO) [BR:
syk00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00640 Propanoate metabolism
KDN34_00060 (fadB)
00650 Butanoate metabolism
KDN34_00060 (fadB)
09103 Lipid metabolism
00071 Fatty acid degradation
KDN34_00060 (fadB)
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
KDN34_00060 (fadB)
00310 Lysine degradation
KDN34_00060 (fadB)
00380 Tryptophan metabolism
KDN34_00060 (fadB)
09106 Metabolism of other amino acids
00410 beta-Alanine metabolism
KDN34_00060 (fadB)
09109 Metabolism of terpenoids and polyketides
00907 Pinene, camphor and geraniol degradation
KDN34_00060 (fadB)
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
KDN34_00060 (fadB)
00930 Caprolactam degradation
KDN34_00060 (fadB)
Enzymes [BR:
syk01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.35 3-hydroxyacyl-CoA dehydrogenase
KDN34_00060 (fadB)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.17 enoyl-CoA hydratase
KDN34_00060 (fadB)
5. Isomerases
5.1 Racemases and epimerases
5.1.2 Acting on hydroxy acids and derivatives
5.1.2.3 3-hydroxybutyryl-CoA epimerase
KDN34_00060 (fadB)
5.3 Intramolecular oxidoreductases
5.3.3 Transposing C=C bonds
5.3.3.8 Delta3-Delta2-enoyl-CoA isomerase
KDN34_00060 (fadB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
3HCDH_N
ECH_1
3HCDH
ECH_2
NAD_binding_2
Motif
Other DBs
NCBI-ProteinID:
QUN05932
LinkDB
All DBs
Position
complement(13064..15214)
Genome browser
AA seq
716 aa
AA seq
DB search
MIYQSNSIQVELLDTQIANIRFNSDGSVNKFDQETLTSLDAALNALIATPDVRGLVLTSA
KDSFIVGADITEFLTLFAEADEVLLSWLQLANSIFNKLEDLPYPTVSAVNGYALGGGCEA
ILSTDFRVGDSTAKVGLPETKLGIIPGFGGTVRLPRLIGADNALEWITTGKDQRPDDALK
VGFFDAVTTPENLQAAALQMLDDAIAGKLEWQSKRQQKQQPLQLDKMEAMMCFSTAKGMV
FTVAGKHYPAPMAAVNVIEQAAKMPRQQALQVEHHAFAKLAKTDVAKALVGIFLNDQLVK
SKAKKSIKSAHPVSHAAVLGAGIMGGGIAYQSASKGTPIVMKDINESALALGLSEAAKLL
TAQVERGRSSPQKMAQVLNAITPALDYSAVKPVDIVVEAVVENPKVKSMVLAEVEQVVTD
NAVIASNTSTISINLLANSLKKPERFCGMHFFNPVHKMPLVEIIRGRDTSDSTIATVVAY
ASKMGKTPIVVNDCPGFFVNRVLFPYFAGFNGLIADGADFATIDKVMEKQFGWPMGPAYL
LDVVGMDTGHHAQAVMAQGFPERMTPSEHDALQLMFAQNRLGQKNGQGFYRYTPDKKGKP
KKDVDATTYALLSAAFGPLKEFTADDIIARTMIPMINETVRCLEEGIVASPAEADMGLVY
GLGFPPFRGGVFRYIETMGIANYVAWADKYAYLGALYQVTDTMRQLAAENGHYYQN
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgatctatcaaagtaacagtatccaggttgaacttcttgacacccaaattgcgaatatt
cgctttaattcagatggttcagtaaacaagtttgaccaagaaaccctaacatcactcgat
gccgcattaaacgcattaatagccacacctgatgttcggggattagtcctcacctcagca
aaagatagttttatcgtaggcgctgatataaccgaatttctgacattgtttgccgaagca
gatgaagtgcttttatcctggctacagctagcgaatagtattttcaataagttggaagat
ttgccatatcccacagtgtctgctgttaatggctatgctctgggtggcggttgtgaagcc
attttatctaccgatttccgtgttggcgacagcaccgcaaaagtcggattacccgagacc
aagttagggatcattcctggttttggcggcacagtgcgactgcctcgacttattggtgct
gacaacgcgcttgaatggattaccactggcaaagatcaacgacccgatgatgcattaaaa
gtggggttctttgatgccgttactacgcctgaaaatctacaagcggctgccttacaaatg
cttgacgatgccattgccggaaaattggagtggcaatcaaaacgtcaacaaaagcaacaa
ccgcttcagctagataaaatggaagcaatgatgtgtttcagcaccgctaaagggatggtg
ttcactgttgcgggtaagcattacccggcaccaatggctgcagtaaacgtaattgagcaa
gcagctaaaatgccacggcaacaggcattacaggtagagcatcacgcatttgcaaaactg
gcaaaaacggacgttgccaaagcattagttggtatatttctcaatgatcagttagtaaag
agcaaagccaaaaagtcgataaaatcagcgcatccagtctcacatgcagcggtgttaggt
gccggtatcatgggcgggggtattgcttatcagagtgccagcaaaggcaccccgatagta
atgaaagatattaatgaaagcgcactggcattaggactatctgaagctgccaaactgctg
acagcacaagttgaacgaggtcgctcttcgccacaaaaaatggcacaggtactaaatgcg
attacgcctgcattggattattccgccgttaaaccagtagatattgtggtagaggctgta
gttgaaaatcccaaagtaaaaagtatggtgttagcagaagtagagcaagtggtgactgat
aatgcagttatcgcgtccaacacctcaacaatatccatcaatttgctcgccaacagcctt
aagaagcctgagcgcttctgcggtatgcatttcttcaacccggttcacaaaatgccgctg
gtggagattattcgtggtagggacacttcagattctactatcgccacggtagttgcctac
gcaagcaagatggggaaaacccctatcgtcgtgaacgactgtcctggctttttcgtcaat
cgtgtgctgtttccatacttcgctggatttaatggattgattgcggatggtgcagacttt
gcgacgattgataaagtcatggaaaagcaatttggttggccaatggggccggcgtattta
cttgatgttgttggaatggatactggccatcacgcccaagcggttatggcacagggattt
cccgagcgaatgacccccagtgaacacgatgctttgcaattgatgttcgcgcaaaatcgc
ctaggacaaaaaaatggccaaggcttctatcgttataccccagataaaaagggaaagccc
aaaaaggacgtagatgccaccacatatgcattgttatccgcagcatttggcccactcaag
gagtttactgctgacgatattattgcccggacgatgatccccatgattaacgaaacggta
cgctgtctcgaagaaggcattgtagcctctccggctgaagcagatatgggactggtatat
ggcctgggctttccaccgtttagaggtggtgtattccgctatatagaaacgatgggaatt
gccaattatgtcgcttgggcagataaatatgcctatctcggagctttgtatcaggtcact
gacaccatgcgacaactagccgcggaaaacggccactattatcagaactaa
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