Shewanella yunxiaonensis: KDN34_04020
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Entry
KDN34_04020 CDS
T07775
Symbol
truB
Name
(GenBank) tRNA pseudouridine(55) synthase TruB
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
syk
Shewanella yunxiaonensis
Brite
KEGG Orthology (KO) [BR:
syk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
syk03016
]
KDN34_04020 (truB)
Enzymes [BR:
syk01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
KDN34_04020 (truB)
Transfer RNA biogenesis [BR:
syk03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
KDN34_04020 (truB)
Prokaryotic type
KDN34_04020 (truB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
Pus10_C
Motif
Other DBs
NCBI-ProteinID:
QUN06628
LinkDB
All DBs
Position
845673..846623
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AA seq
316 aa
AA seq
DB search
MAKRPKGRFVDGVVLLDKPTGMSSNHALQRVKRIYNAVKAGHTGALDPLATGMLPICLGE
ATKFSQHLLDADKRYLVTAKLGVRTDTSDADGEVVSQRPLAFSAVQLDAALDHFRGDTMQ
VPSMFSALKYQGQPLYKYAREGKDVSREARPITVYELKFIALNDDELTLEIHCSKGTYIR
TIIDDLGEMLGCGAHVIMLRRLQVGRYPTERMVTLEQLQQLLDDAIAQNIVPSQLLDPLL
LPADAAVADLEECNVPEALGAYLLNGNPVRANGLKPGELVRITLGEAHRFIGVGIMNDDG
LLAPKRLMVMHENSID
NT seq
951 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaacgacctaagggccgtttcgtggatggcgttgtgttgctggataaacccacc
ggcatgagctccaaccacgccttacagagagtgaagcggatttataacgccgttaaggcc
gggcacactggagcactggatccactggctaccgggatgttgccgatctgtttgggagag
gcgaccaagttttctcagcatcttctggatgcggataaacgctatctggtgaccgctaaa
ctcggcgttcgtactgataccagtgatgccgatggtgaagtggtcagtcagcgaccattg
gctttcagtgcagtgcagttggacgcggcgctggatcactttcgcggcgataccatgcag
gtgccttcaatgttttcggcacttaagtatcaagggcaaccgctatataagtatgcccgc
gagggcaaagatgtttccagagaagcccgtcccatcaccgtttatgaactgaagttcata
gcgctgaatgacgatgaactgacgctggaaattcattgttccaaaggcacatatatccgg
accattattgacgacttgggcgaaatgctgggttgtggcgcgcatgtgattatgctgcgg
cggctgcaggtcggccgttaccctactgaacgcatggtgacgttggaacaactgcaacag
ctgttagatgatgccatcgcgcagaatattgtgccgtcccagttattagatccattgttg
ttacccgcagatgccgccgtagctgacctggaagaatgtaatgtcccggaagcgttgggg
gcatatttgctcaatggtaatcccgtgcgagccaatggcctgaaacctggagagttagtg
cggattacgctgggagaggcgcatcgtttcattggtgtaggcatcatgaatgatgatggt
ttattggcacctaagcggttgatggtcatgcacgaaaactctatcgactga
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