Shewanella yunxiaonensis: KDN34_04035
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Entry
KDN34_04035 CDS
T07775
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
syk
Shewanella yunxiaonensis
Pathway
syk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
syk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KDN34_04035 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
syk03019
]
KDN34_04035 (pnp)
03016 Transfer RNA biogenesis [BR:
syk03016
]
KDN34_04035 (pnp)
Enzymes [BR:
syk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
KDN34_04035 (pnp)
Messenger RNA biogenesis [BR:
syk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
KDN34_04035 (pnp)
Transfer RNA biogenesis [BR:
syk03016
]
Prokaryotic type
tRNA degradation factors
KDN34_04035 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
KH_2
KH-I_KHDC4-BBP
OB_RRP5_4th
S1_2
KH_KhpA-B
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
QUN06631
LinkDB
All DBs
Position
849322..851427
Genome browser
AA seq
701 aa
AA seq
DB search
MNPIVKSFKYGQHTVSLETGVIARQADGAVLASMGDTTVLVTVVGKKESDPSRDFFPLTV
NYQEKTYAAGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPDGFTNEVQVIITVVSVD
PQIDPDIISMIGTSAALAISGIPFNGPLGSARVGYINGEYVLNPSVADLDNSELDLVVAG
TKNAVLMVESEAKILPEEVMLGAVVYGHEQQQVVIDAIAEFQKEAGKPRWDWTAPVKNES
LADKVKAIAEADFTEAYQITAKQERYQAVADIKKAAVEKLLAEDPQLDATEIDNLLGSLE
KRVVRSRILKGLPRIDGREPDMVRALSVMAGVLPRTHGSALFTRGETQALVTCTLGTERD
AQKVDSLLGERTKRFMLHYNFPPFSVGETGLVGSPKRREIGHGKLAWRGVNAVMPSEAEF
PYSVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDI
LGDEDHLGDMDFKVAGTRDGVTALQMDIKIEGITKEIMEIALQQAYGARVHILNVMDQAI
NKARPDISDHAPRITTIKINPEKIREVIGKGGATIRALTEETGTTIELEDDGTVKIASTN
ADATKEAIRRIEEITSEVEVGRIYKGKVIRIVDFGAFVNILPGKDGLVHISQIAEERVAN
VSDYLQLNQEVTVKVMEVDRQGRVRLSIKEAQQAAAADSAE
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
gtgaatccaatagtaaaaagttttaaatatggtcaacatacagtctctctggaaacaggc
gtaatcgctcgtcaggccgatggtgccgttctggctagcatgggcgataccaccgttctg
gtaaccgtagtcggtaagaaagaatcagacccaagccgtgacttctttcctcttactgtc
aactatcaggaaaaaacttatgctgccggtaaaatccctggcggcttcttcaagcgtgaa
ggtcgtccttctgaagatgaaaccctgattgcccgtctgattgaccgtcctatccgtcca
ctgttccctgatggtttcactaatgaagtgcaggtcatcatcacagtggtttctgtcgat
ccgcagattgatccagatatcatctctatgattggtacttctgctgcattggcgatttcc
ggtattccattcaatggtcctctgggctctgctcgtgtgggttacattaatggtgaatac
gtactgaacccaagcgttgctgatttggataacagcgaactggatttggtggttgccggg
accaaaaatgcagtattgatggtggaatctgaagcgaagatcctgccggaagaagtgatg
ctgggggcagttgtttatggtcatgaacagcagcaggtagttatcgacgcgattgctgaa
ttccagaaggaagccggtaagccacgttgggactggactgcaccagtgaagaatgaatca
ctggctgataaggtcaaagccattgctgaagcggactttactgaagcctaccagatcact
gctaagcaggaacgttatcaagctgttgctgacatcaagaaagccgctgtagaaaaactg
ttggcggaagatccgcagttagatgccacagaaattgataatctgttgggtagcctggaa
aaacgcgttgtacgtagccgtattttgaaagggttgccacgcatagacggtcgtgaacca
gatatggtacgtgccctgagtgttatggctggcgttctgcctcgtactcacggtagcgcg
ttgtttactcgtggtgaaactcaggcgctggtcacttgtactctcggtactgaacgtgat
gctcagaaagtggattctctgctgggtgagcgtactaaacgtttcatgctgcactacaac
ttcccaccattctctgtgggtgaaaccggtctggttggctcaccaaaacgccgcgaaatc
ggtcatggtaagttggcttggcgtggtgtcaatgcagtgatgccatcagaagctgaattc
ccatacagtgttcgtgtggtatctgaaattaccgaatcaaacggttccagctctatggcc
tctgtctgtggtagttctctggcgctgatggatgcgggtgtaccaatcaaaacttctgtt
gccggtatcgctatgggcttggtaaaagaaggtgatgactttgtggtactgtctgacatt
ctgggtgatgaagatcatctgggcgacatggacttcaaagtggctggtactcgtgacggt
gttactgcactgcagatggacatcaaaattgaaggtatcaccaaagagatcatggagatc
gctttgcagcaggcctatggcgctcgtgtgcacattctgaatgttatggatcaggcgatt
aataaagctcgtccagatatttctgatcatgcgccacgtatcactaccatcaagatcaac
ccagagaaaatccgtgaagttatcggtaaaggcggcgccactattcgtgcactgactgaa
gaaaccggtaccaccattgaactggaagatgacggtactgttaagatcgcctctactaac
gctgacgccactaaagaagctatccgtcgtattgaagagatcacctctgaagtggaagtc
ggtcgtatctacaagggtaaagttattcgcatcgttgatttcggtgcctttgtaaacatc
ctgcctggtaaagatggtctggtacacatttcgcaaatcgctgaagagcgcgtagcgaat
gtttctgattatctgcaattgaatcaggaagtcactgtcaaagtgatggaagtagatcgt
cagggtcgtgtacgtctgtctatcaaagaagcacagcaagctgctgccgctgattctgct
gaataa
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