Shewanella yunxiaonensis: KDN34_12755
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Entry
KDN34_12755 CDS
T07775
Symbol
phrB
Name
(GenBank) deoxyribodipyrimidine photo-lyase
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
syk
Shewanella yunxiaonensis
Brite
KEGG Orthology (KO) [BR:
syk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
syk03400
]
KDN34_12755 (phrB)
Enzymes [BR:
syk01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
KDN34_12755 (phrB)
DNA repair and recombination proteins [BR:
syk03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
KDN34_12755 (phrB)
Prokaryotic type
KDN34_12755 (phrB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
Motif
Other DBs
NCBI-ProteinID:
QUN05078
LinkDB
All DBs
Position
complement(2779686..2781143)
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AA seq
485 aa
AA seq
DB search
MTSPDTKPTVFIWFRNDLRVTDNQALSAACEHAKTVNANIQAVYIVTPAQWQAHDVGSRQ
LDFIRRHLQLVARALASLGIELTVWQCQHFADIPALWQRQLSSRNIVAIYAGREPELNEI
RRDQAMLNHGLPLQLTNEHCLLAPGSVLTKSGEMYRVFTPFFRRWREIAQQYPVVPLGPP
APVGPAIADVNIESLLDTINRYFLPLIKSDNHYQWPAGEGEAQRRLQHFVFTAVSDYQQQ
RDFPALDGTSSLSPYLTLGVLSPRQCFAALLARFPAALADDTSPVRCWLSELVWREFYRH
LLVAFSALSMGGNFNPLADGIVWRNHPQEFSAWCEGRTGYPIVDAAMRQLNNTGWMHNRL
RMVVASFLSKHLLIDWRWGERYFRQQLLDGDLAANNGGWQWSAGTGCDAQPWFRIFNPIS
QSEKFDADGSFIRHWLPELRHWPLAQLHQPVPEKSLFTGDYPAPIVEHSSARQRALSALA
VLKKA
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgactagtccagatactaagccaaccgtatttatctggtttcgcaatgatctccgggtg
acggataatcaagcattatccgccgcctgcgaacatgccaaaactgtaaacgccaatatt
caagccgtgtacatagtaacgcctgcacaatggcaagcccatgatgttggtagccggcaa
ctggattttattcggcgtcatctgcagttggtggcccgcgcattggccagtctcgggatt
gaactaactgtgtggcaatgtcagcactttgccgatattccagcattgtggcaacggcaa
cttagttcgcgaaatattgtcgccatatacgccggccgcgagccggagcttaatgagatt
cgccgcgatcaagcgatgctcaaccatggactgccattacagctgaccaatgagcattgt
ttgcttgccccgggttcggtgctgacaaaaagtggcgaaatgtatcgggtattcaccccg
ttttttcggcgttggcgtgagatcgctcagcagtatccggtggtccctttaggccctccc
gcacctgttggcccagccattgcggatgtaaatattgagtccttgctcgatacaattaac
cgctatttcctgccgttaattaaatctgataatcactaccagtggcccgccggggaaggg
gaagcacagcggcgactgcagcactttgtgttcaccgcagtaagcgattaccaacaacaa
cgggattttcctgccctggatggcactagcagtttatcgccctatttaaccttgggagtg
ttaagtccacggcagtgttttgccgccttgttggctcgtttcccggcagccctggcagat
gatacgagtccagtgcgctgctggttatctgaactggtctggcgcgaattttaccgacat
ttgctggtggcattctcggcgttgagtatgggcggcaactttaacccattagcagatggt
attgtctggcgtaaccatcctcaggaatttagcgcttggtgtgaaggccggaccggctac
cccattgtcgatgcagcgatgcgacagctgaataataccggctggatgcataatcgcttg
cgtatggtagtcgccagtttcctgagcaaacatcttttgattgattggcgatggggcgag
cgatatttccggcaacagttgctagatggcgatcttgcggccaataacggcggttggcag
tggtcggctggcacaggttgtgatgctcagccctggtttcgtatttttaatccgattagc
cagagcgagaaatttgatgcggatggcagttttatccgccactggctgccggaactacga
cattggcctttggcacaactgcatcaaccagtcccagagaaaagcctattcactggtgat
tatcctgcaccgattgttgaacactcttctgcccggcaacgcgcgctgtcagcgttagcc
gttttgaaaaaggcctaa
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