Shewanella yunxiaonensis: KDN34_13450
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Entry
KDN34_13450 CDS
T07775
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
syk
Shewanella yunxiaonensis
Pathway
syk03410
Base excision repair
syk03430
Mismatch repair
syk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
syk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
KDN34_13450 (recJ)
03430 Mismatch repair
KDN34_13450 (recJ)
03440 Homologous recombination
KDN34_13450 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
syk03400
]
KDN34_13450 (recJ)
DNA repair and recombination proteins [BR:
syk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
KDN34_13450 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
KDN34_13450 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KDN34_13450 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
QUN05197
LinkDB
All DBs
Position
complement(2924395..2926119)
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AA seq
574 aa
AA seq
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MNQKIVRRPRVDDSHLPAHLPPLLKQIYASRGLAADDCELTLTRMLRPETMLGLSQAATL
LAGAIIQQQHVVIVGDFDADGATSTSVCLLALRMMGAQRCSFLIPNRFDYGYGLSPEIVA
VAARQHAQVLVTVDNGISSIDGVAAAKAAGMTVIITDHHLPGRQLPDADAIVNPNQPGCT
FASKSIAGVGVAFYLMTALRAELRGRDYFAANGLAIPNLGQLLDLVALGTVADVVALDTN
NRIMVEAGIKRVRAGQCRPGITALLEVARREPQRLVAADFGFAVGPRLNAAGRLDDMALG
VETLLCDDLYQARRMAAELDGLNAERRELEAGMQQEALQYIRTLDFAEQQLPWGIALYQP
DWHQGVIGILASRIKDRYHRPVIAFAEASDSEIKGSARSINGLHMRDLLELINSRHPGMI
IKFGGHAMAAGMTLPKHAFSDFANAFDATVHELLAAEDLQGQLWSDGELPTEYFTLDTAQ
LLRDAGPWGQAFPEPTFDGNFRILQQRLVGEKHLKLVLESECGSVMADAIAFNVDLNVWP
DATIQHVHLLYKLDVNEFRGNISLQLLVEQLEPL
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
gtgaatcagaaaattgtacgtcgtccgagggtggatgacagccatttacccgcccattta
cctccattactcaagcagatttacgccagtcgcgggctggcggctgacgattgtgagttg
acgctgacccgcatgttacgccccgaaaccatgctggggttgtcgcaggcggcaacgctg
ttagcgggggccataatacaacagcaacatgtcgtgattgtgggcgatttcgatgctgac
ggtgcgacgtctaccagtgtctgtttattagcgttacgtatgatgggcgctcagcggtgc
agttttctgatccccaatcgttttgattatggttatggcttgagccccgagatcgttgca
gtcgctgcgcgtcagcacgcacaagtgctagtgacggtggataacggtatttcatccatt
gacggcgtagccgcggcaaaagcagccggtatgaccgtgattatcaccgaccatcatctg
cctgggcggcaattacccgatgccgatgccatcgttaaccctaatcaacccggttgcacg
ttcgcctccaaatcgattgcgggcgttggggtggccttctatctgatgacggcgctgcgg
gcagaacttcgcggccgcgactatttcgccgcaaacggtctagcaattccaaatcttgga
caactgttggatctggtcgctctggggactgttgccgatgtggtggctctggataccaat
aatcgcattatggttgaagcgggtataaaacgcgtgcgcgcggggcagtgtcgtcccggg
atcactgccttactggaagtggctcggcgcgagccacaacgattagtggcggcagatttt
ggttttgctgttggccccagactgaacgccgccggacgcctcgatgacatggcgctcggt
gtagaaacgctattgtgtgacgacttgtatcaggcacgacggatggctgctgaactggat
ggtcttaacgccgaacgccgcgagctggaagccggcatgcaacaagaagcactgcaatat
atacgtacgctggatttcgcggaacagcagttgccctgggggattgcgctttatcaaccg
gattggcatcaaggggttatcggcattctggcctcgcgcatcaaggaccgatatcaccgg
ccggttatcgcgtttgctgaagcctcagacagcgaaataaaggggtcggcgagatcgatc
aacggcctgcatatgcgtgacttgcttgaactgatcaatagtcgtcatccaggcatgatc
atcaaatttggtggtcacgcgatggcggcggggatgacgctgcccaagcatgcgttcagt
gattttgccaatgcgtttgatgctaccgtccatgaactgctggcagcggaagatctgcaa
gggcaattgtggtcggatggtgaattaccaactgagtatttcacgctcgatactgcccag
ctactgcgcgatgccggaccttggggacaggcatttccggaacctacttttgacggtaat
tttcggattctgcagcaacgcttagtgggcgaaaaacacctcaagctggtgttggagtct
gagtgtggttcggtgatggctgatgcaattgcatttaacgtcgatttgaacgtctggcct
gatgccacaattcaacatgtgcacttgctttataagctcgatgtcaatgagtttcggggc
aatatctcgctgcagttgttagtcgaacagttggaaccgctgtaa
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