Shewanella yunxiaonensis: KDN34_13475
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Entry
KDN34_13475 CDS
T07775
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
syk
Shewanella yunxiaonensis
Brite
KEGG Orthology (KO) [BR:
syk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
syk03009
]
KDN34_13475 (srmB)
Enzymes [BR:
syk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KDN34_13475 (srmB)
Ribosome biogenesis [BR:
syk03009
]
Prokaryotic type
rRNA helicases
KDN34_13475 (srmB)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QUN05202
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All DBs
Position
2930573..2931799
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AA seq
408 aa
AA seq
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MQFEEFELEPELLASLKNMGHKTPTTIQQLTIPVAMEQRDLLAHAPTGTGKTASFLLPAL
QHLLDFPRRYPGQARVLVLTPTRELASQVHRYASHLATHVDLTMGIVTGGVPYGPQEQAL
RGNIDLMVATPGRLMDYLDKGLFSATEVEILIIDEADRMLDMGFAQVVKSIVIEAQKRKQ
TMLFSATLEGNGVRNFANELLEDPAVIEAEPPRSEKAKIHQWLHLADDKDHKFALLCHIL
RREEVSRAIVFAKTREIVASLEGQLLQAGIPAAFMRGDMEQKKRFQALGRFTKGEVKVLL
ATDVAARGIDVEGITHVINYDMPRTADIYVHRIGRTGRAGNKGTAISLVEAHDMLIVSKI
ERYTEQKLKRRVIDELRPKHKEAKIPVKKKPQKADKKKANKNKEKISK
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgcaatttgaagagttcgagttggagccagaactgctggcatccctgaaaaacatgggt
cataaaacccctaccacaattcagcaactaactatcccggtcgctatggaacagcgggat
ctgctagcacatgcgcctaccggtactggcaaaaccgccagtttcctgttgccagcgttg
caacatctgctggacttccctcggcgctacccgggacaagcaagggtgctggtgctgacc
ccaacacgagaactggcaagtcaggtacatcgttatgccagccatttagcaacacatgtc
gacctgaccatgggcattgtcaccggtggtgttccttatggtcctcaggaacaagcactg
cgtggcaatatcgacctgatggtggccacacctgggcgtttgatggattacctcgacaag
gggctgtttagtgccaccgaagtggaaattctgatcattgacgaagccgaccgtatgttg
gatatgggctttgcccaagtggtcaaatccatcgtgattgaagcgcagaaacgtaaacag
accatgctgttttctgccacgctggaaggtaatggcgtacgcaactttgctaacgaattg
ctagaagacccggcggttattgaagccgaaccaccgcgcagcgaaaaagccaaaattcat
cagtggcttcatctggcagatgataaagatcataaatttgcgttgctgtgtcatatctta
cggcgcgaagaggtttcccgggcgattgtctttgccaaaacccgtgaaatcgttgccagc
cttgaaggccagctgttgcaggcgggcattccggcggcctttatgcgtggtgatatggaa
cagaaaaagcgctttcaggcgctggggcgctttaccaagggtgaagtcaaagtgttgttg
gcgaccgatgttgccgcacgcggcatcgatgtagaaggtatcacccatgtgatcaattac
gatatgccacgcaccgccgatatttatgtgcatcgcatcggacgtactggccgtgcgggt
aataaaggcaccgctatctcgttggtggaagcccacgatatgctgatcgtcagtaagatc
gagcgctataccgaacagaagctgaaacgtcgtgtcattgatgagctgcgtcctaagcac
aaagaagccaaaatacccgttaagaagaagccgcagaaggccgataagaaaaaagctaat
aaaaacaaagaaaaaattagcaaatga
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