Shewanella yunxiaonensis: KDN34_15095
Help
Entry
KDN34_15095 CDS
T07775
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
syk
Shewanella yunxiaonensis
Pathway
syk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
syk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KDN34_15095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
syk03019
]
KDN34_15095
03009 Ribosome biogenesis [BR:
syk03009
]
KDN34_15095
Enzymes [BR:
syk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KDN34_15095
Messenger RNA biogenesis [BR:
syk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KDN34_15095
Ribosome biogenesis [BR:
syk03009
]
Prokaryotic type
rRNA helicases
KDN34_15095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
Cas3-like_C_2
AAA_22
UTP25_NTPase-like
Motif
Other DBs
NCBI-ProteinID:
QUN05499
UniProt:
A0ABX7YRV5
LinkDB
All DBs
Position
3311050..3312894
Genome browser
AA seq
614 aa
AA seq
DB search
MSSSELTFRELGLSEELLRALNELGYEHPTPIQAASIVPLMEGKDILGQAQTGTGKTGAF
ALPLLNAIDHKFNAPQILVLAPTRELAVQVAEAFTSYAKYLKGFHVLPIYGGQSMHQQLQ
ALRRGPQVIVGTPGRVMDHMRRGTLKLDTIKALVLDEADEMLKMGFIDDIEWILDQTPDD
RQLALFSATMPEQIKRVANKHLASPINISIAASHATVDSIEQRFIQVSQHNKLEALVRVL
EVENTEGIIIFVRTRNSCVELAEKLDARGYACSPLHGDMNQQARERAVDQLKNGKLDILI
ATDVAARGLDVERIGHVINYDIPYDTEAYVHRIGRTGRAGRSGMAILFVTSREMRMLRMI
EKATNSRISPMKVPSPETVAERRLSRLGDQVAEVINSQQLDFMKGAVAQLCQQLEVDTDI
LAAALLYQVQQERPLQLPAMQERQRDVQDSKFQSGDDRSSRRRQSSRATPGDLGSAEELK
DNPDIKMCRYMLEVGRDHGVGVGNIVGAIANEANIDSRYIGQIQLLDQISTIDLPAGMPK
DILMHLKKVRVCGRPINIKEVGTQLDSGKEQSKPRRSRKQEDEGHADRERSPRTERSKPR
FEGERRPKRRERKE
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccagtgaactgactttccgtgaactcgggctttccgaggagttgctgcgcgcc
ctgaacgaactgggctacgagcatccaacccctatccaggccgccagtatcgtgccgctg
atggagggtaaagatattctgggccaggctcagacagggaccggtaaaaccggcgctttt
gctttaccgttacttaacgccattgaccataaattcaatgccccgcaaattctggtattg
gcgccaacccgggaactggccgtacaggtcgcagaagcgttcaccagctatgccaaatac
ctcaaagggttccatgtactgcctatttatggcggtcagagcatgcatcagcagttgcaa
gcactgcgccgtgggccacaggtaatagtcggtacaccgggtcgtgtgatggaccatatg
cgtcgtggcacgttgaaactggacaccatcaaggcgctggtgctggatgaagccgatgaa
atgctgaaaatgggcttcatcgatgacatcgaatggatcttggatcagactccagatgac
cgccaattagccctgttctcagcgaccatgccagaacagatcaagcgcgttgccaacaag
catctggcaagcccaatcaatatcagtatcgccgctagtcatgcgacggttgactctatt
gaacagcgctttattcaggtgtcacagcacaataagctggaagcgctagtgcgggtgctg
gaagtggaaaacaccgaaggcattattatcttcgtgcgtacccgtaactcctgtgttgag
ctggctgaaaagctggatgcgcgtggttatgcctgttcgccgctgcatggtgatatgaac
cagcaggcgcgtgaacgtgcggttgaccagttgaagaatggcaagctggatattctgatc
gccactgacgtcgccgctcgcggtcttgacgtagaacgtatcggccatgtgatcaactac
gatattccttacgatactgaagcctatgtacaccgtattggtcgtactggtcgtgccggc
cgcagcggtatggcaatcctgtttgtgaccagtcgtgaaatgcgcatgctgcgtatgatt
gaaaaggccactaacagccgtatttcgccaatgaaagtgccaagcccagaaactgtggca
gaacgtcgtctgtcgcgtttaggtgatcaagttgccgaagtcatcaatagccaacagtta
gacttcatgaaaggtgcagtggcacagctgtgtcagcaactggaagtcgatacggatatt
ctcgctgccgcactgttgtatcaggtacagcaagaacgtccgctgcaactgccagccatg
caggagcgtcagcgcgatgtgcaggacagcaaattccagagcggtgatgaccgcagcagc
cgtcgccgtcaaagcagccgagccacacctggcgatcttggcagcgccgaagaactgaaa
gacaatccagatatcaagatgtgccgctatatgctggaagttggccgtgatcacggtgta
ggtgtgggtaacatcgtgggcgccattgctaacgaggcaaatattgacagccgttatatt
ggtcagatccagctgctggatcagatcagtacgatagatctgcctgcggggatgccaaaa
gatattctgatgcatctgaaaaaagtgcgcgtctgtggtcgtccaatcaatatcaaagaa
gttggcacacagctcgatagtggcaaagagcagagcaaaccgcgtcgtagccgcaagcag
gaagatgaaggtcatgcggatcgtgaacgcagtccacgtaccgaacgtagcaagccacgc
tttgaaggcgaacgtcgtccgaaacgtcgtgaacgcaaagagtaa
DBGET
integrated database retrieval system
