Shewanella yunxiaonensis: KDN34_15350
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Entry
KDN34_15350 CDS
T07775
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
syk
Shewanella yunxiaonensis
Brite
KEGG Orthology (KO) [BR:
syk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
syk03009
]
KDN34_15350 (rimO)
Enzymes [BR:
syk01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
KDN34_15350 (rimO)
Ribosome biogenesis [BR:
syk03009
]
Prokaryotic type
ribosomal protein modification factors
KDN34_15350 (rimO)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
TRAM_2
UPF0004
YajR_YAM
NTPase_1
Methyltransf_2
TRAM
CLP1_P
Motif
Other DBs
NCBI-ProteinID:
QUN05546
LinkDB
All DBs
Position
3369216..3370667
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AA seq
483 aa
AA seq
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MPILKNPVETFDPKQTTTLETPAKTLAQTTVESDATAGGNRIGFVSLGCPKNLVDSERIL
TQLRIDGYEVTNTYDDADLVIVNTCGFIDAAVEESLDAIREALEENGKVLVTGCLGAKEN
QIREVHPDVLEITGPHSYEAVLNHVHKYVPKPDHNPFTSLIPQTGVKLTPKHYAYLKISE
GCDNRCTFCIIPSLRGDLDSRDIGSVLDEAKRLVESGVQEILVVSQDTSAYGKDKAGRTG
FWNGMPVKQNITELAKQLGHMGAWIRLHYVYPYPWVDELIPLMEQGLILPYLDLPLQHAS
PRILKLMKRPGRIDRQLEAIRKWREICPDLVIRSTFIVGFPGETEEDFQMLLDFLKEARL
DRVGCFKYSEVEGAAANDLGEELISEDVKEDRYARFMEVQAEISAERLARLVGRELDILI
DDVDEEGAIGRCYADAPEIDGMVFINDETELQPGNLVRAVITHSDEHDLWAELVDMPDET
EAE
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgccaatcttgaaaaatcctgtagaaacttttgaccccaaacagaccaccacactggaa
acaccggccaagacactggcgcagaccaccgtggagtctgacgctaccgctggcggtaat
cgtattggttttgtcagtctgggttgtcccaagaacctggtggactcagaacgcattctg
acccaactgcgcattgatggttatgaagtcaccaatacctacgatgatgccgatttggtg
attgtgaacacctgtggctttattgatgcggcggtggaagagtcgctggatgcgatccgc
gaagcactggaagaaaacggcaaagtattagtaactggttgcctcggggcaaaagaaaat
cagatccgcgaagtccatcctgatgtgctggaaattaccggcccacatagctatgaagcg
gttctgaatcatgtgcataaatacgtgccgaagccagaccataatccgtttacctcgctg
atcccacagaccggcgtcaaactgacccccaagcattacgcctatctgaaaatttccgaa
ggctgcgataaccgctgtactttctgcatcattccttcactgcgtggcgacctcgacagt
cgcgatatcggcagtgtgctggacgaagccaaacgcctggtagaaagcggcgtccaggag
atcctggtggtgagtcaggacacctctgcttatggcaaagataaagccgggcgcaccggg
ttctggaacggcatgccggttaaacagaacatcaccgagctggcaaagcagcttggtcat
atgggggcctggatccgcctacattatgtttacccttatccttgggtagatgagctgatc
ccgctgatggaacagggcttaatcctgccttatctggatctgccgctgcaacatgccagc
ccacgcattctcaaactgatgaaacgcccggggcgcattgaccgtcagttagaggccatc
cgtaagtggcgcgagatctgtccagatctggtgatccgttctacctttatcgtgggcttt
cccggcgaaactgaagaagatttccagatgctgctggatttccttaaagaagcccgattg
gatcgtgttggctgcttcaaatactcagaagtggaaggcgctgctgccaacgatttgggt
gaagaattaatcagcgaagatgtgaaagaagaccgctatgcccgctttatggaagtacag
gcggaaatcagtgcagaacggctggcgcgcctggtgggccgtgagctggacattctgatc
gacgatgtcgatgaagaaggtgccattggccgctgttatgcagatgcccccgaaatcgac
ggcatggtgtttattaatgatgaaaccgagctgcaaccggggaacttggtacgggcagta
atcacgcactctgatgaacatgatctgtgggccgagctggttgatatgccagatgaaact
gaagccgaataa
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