Shewanella yunxiaonensis: KDN34_16230
Help
Entry
KDN34_16230 CDS
T07775
Name
(GenBank) AMP-binding protein
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
syk
Shewanella yunxiaonensis
Pathway
syk00061
Fatty acid biosynthesis
syk00071
Fatty acid degradation
syk01100
Metabolic pathways
syk01212
Fatty acid metabolism
syk02024
Quorum sensing
syk04146
Peroxisome
Module
syk_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
syk00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
KDN34_16230
00071 Fatty acid degradation
KDN34_16230
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
KDN34_16230
09145 Cellular community - prokaryotes
02024 Quorum sensing
KDN34_16230
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
syk01004
]
KDN34_16230
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
syk04147
]
KDN34_16230
Enzymes [BR:
syk01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
KDN34_16230
Lipid biosynthesis proteins [BR:
syk01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
KDN34_16230
Exosome [BR:
syk04147
]
Exosomal proteins
Exosomal proteins of breast milk
KDN34_16230
Exosomal proteins of breast cancer cells
KDN34_16230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C_3
Motif
Other DBs
NCBI-ProteinID:
QUN05704
UniProt:
A0ABX7YTP9
LinkDB
All DBs
Position
3554020..3555678
Genome browser
AA seq
552 aa
AA seq
DB search
MSASYKSPVEMLNQWAEVQGDAVYLRQPIKGQFRDYSWRQVQQTAQRLAGALRHLGYEPG
EKIALLSKNCAEWFITDLALMHGGYISVPIYPTANADTIRYVLEHSGCKAIFVGKLDHWA
DQEAGVGGELLRLALPYETMPAQYQWLQLLNMGQPLVDAPLPAAEQIMTLIYTSGSTGKP
KGAVQTFASYSWTCNAVVRDLKASQEDRLLSYLPLAHITERVAIEGSSFYAGCPVAFVES
LETFVADVQRMQPTVFFSVPRLWTLFQKNIIDKVGSFRKLNLLLKIPLLNWLVKRKIHQG
LGLGKSRLLGSGSAPIPPSLVHWYHSIGLDICEAWGMTENCAYSIINHPFDASKIGTVGK
PIVGCQIKRSADGELLVKSPGLMREYYKAPEATAAAFDEEGYFRTGDLCEIDKDGCVSIT
GRVKDNFKTAKGKYVAPVPIERKLAQDPHVELLCVIGSGLPHPVALIQLSEGAMLQPREE
VRSSLKTTLDAINPNLESHETVDALIVVTEPWTIENDVLTPTLKIKRHVLEQRYTAKAEK
VRGAVVVWEDEI
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcttcttataaaagtccagtggaaatgctcaatcaatgggcagaggttcagggc
gatgccgtatatctgcgtcaacccatcaaagggcaattccgtgattacagttggcgccag
gtacaacaaacagcacaacgtctagcaggggcgttacgccatctgggttatgagccagga
gagaaaatagcactgctatcaaaaaactgtgccgagtggtttatcactgacttagcgctg
atgcatggtggctacattagtgtacctatctaccccacagccaatgccgatactatccgt
tatgttttggagcacagtggttgcaaagccatatttgtcggcaaattggatcactgggca
gatcaggaagccggcgtcggcggagagctattacgcttggcattaccgtatgaaacgatg
cccgcacaataccaatggctgcagttattgaatatggggcagccattggtggatgcaccg
ctaccggcagccgagcaaataatgacacttatctatacttccggctctaccggtaagcct
aagggcgccgtacagacatttgccagttacagttggacctgcaatgccgtcgtgcgagac
ttaaaagcctcacaggaagatcgcctgctttcctacttgccactggcccatattacggag
cgggtcgcgattgagggatcatcgttttatgccggctgtccggtcgcttttgtggaaagc
ctagaaacctttgtcgccgacgtacaacgcatgcaacccacagtatttttctcagtgccg
cggctgtggaccctgttccagaaaaacattatcgataaagtcggcagtttcagaaaactc
aatctgctgctgaaaattccgctattgaactggctggtgaagcgcaagatccaccaaggt
ctgggccttggtaagtcacgactgttgggctcaggttccgccccgatcccaccttcatta
gtgcactggtatcacagtatcgggctggacatctgcgaagcctggggcatgaccgaaaac
tgtgcgtattccattattaatcatccatttgatgccagcaaaatcgggaccgttgggaag
ccaattgttggctgtcaaatcaaacgctccgccgacggtgagttattagtgaaaagtccg
gggctgatgcgggaatactataaagcaccagaagcaacagctgctgcctttgacgaagag
ggctatttccgcaccggcgatctctgcgaaatcgataaagatggctgcgtcagtatcacc
ggcagggtgaaagataatttcaaaaccgccaaaggcaaatacgtcgctccagtgccgatt
gagcgcaagctggcacaagacccgcacgtagaattgctgtgtgtcatcggctcaggactc
ccgcacccggtcgccttgatacaactgtctgaaggagccatgctgcagccacgggaagag
gtgcgtagctcccttaaaaccacacttgatgcaatcaatccgaatctggaatcccacgaa
acagtcgatgcattgattgtggttactgaaccctggacgattgaaaacgacgtgttaaca
ccgacactaaaaatcaaacggcatgtactggaacagcgctataccgcaaaggcagagaaa
gtacgcggtgcggtagtggtttgggaagatgaaatttaa
DBGET
integrated database retrieval system
