Shewanella yunxiaonensis: KDN34_17175
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Entry
KDN34_17175 CDS
T07775
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
syk
Shewanella yunxiaonensis
Pathway
syk03030
DNA replication
syk03410
Base excision repair
syk03420
Nucleotide excision repair
syk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
syk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KDN34_17175 (polA)
03410 Base excision repair
KDN34_17175 (polA)
03420 Nucleotide excision repair
KDN34_17175 (polA)
03440 Homologous recombination
KDN34_17175 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
syk03032
]
KDN34_17175 (polA)
03400 DNA repair and recombination proteins [BR:
syk03400
]
KDN34_17175 (polA)
Enzymes [BR:
syk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
KDN34_17175 (polA)
DNA replication proteins [BR:
syk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KDN34_17175 (polA)
DNA repair and recombination proteins [BR:
syk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
KDN34_17175 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KDN34_17175 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
WHD_BrxR
Motif
Other DBs
NCBI-ProteinID:
QUN05874
UniProt:
A0ABX7YSX2
LinkDB
All DBs
Position
3756943..3759720
Genome browser
AA seq
925 aa
AA seq
DB search
MPKIAENPLILVDGSSYLYRAYYAPPHLTNSKGEATGAVYGVVNMLRSLLSKFQPQQMAV
VFDAKGPTFRNAMYEQYKAHRPPMPDDLRSQIAPLHQIIKALGLPLICESGVEADDVIGT
LALRASKAGRAILISTGDKDMAQLVDDNITLINTMTDTIMGPAEVCEKFGVGPDKIIDLL
ALMGDKADNIPGLPGVGEKTALAMLQGAGSVSHLLAEPECVTTMAFRGAKSMAAKISENA
AILELSYQLATIKTDCELELDWQQLNIEAPDRDTLIKLYGEMEFKRWLGEVLENRLPHPQ
RELTSIGAAATVAPQAPEPVEIEANYETILTEAALARWLEKLMQAPLMAIDTETTSLNYM
DAELVGLSFAVNAGEAAYLPVAHDYDGAPTQLTKDYVLSQLKPLLENPQIRKVGQNLKYD
MSILANAGIKLQGIQFDTMLESYVFNSVASRHDMDGLALKYLGYKCISFEDIAGKGAKQL
TFNQIPLDIAAPYAAEDADITLRLHQHLWPRLEKEQGLPQVFNELELPLIPVLSQIERNG
VLIDTMLLSQQSDELARKIDQLELKAYEIAGEQFNLGSPKQLQELFFEKLGYPVIKKTPK
GAPSTAEEVLVELALDYPLPKIILEHRSLTKLKSTYTDKLPLMVNGKTGRVHTSYHQANA
ATGRLSSSDPNLQNIPVRTEEGRKIRQAFIAPTGRKILAADYSQIELRIMAHLSEDAGLL
KAFAEGKDIHRATAAEVFDVAFETVTSEQRRRAKAVNFGLIYGMSAFGLSRQLDIPRNEA
QSYIDIYFKRYPGVLKYMEQTRALAAEQGYVSTLFGRRLYLPEIRDRNAMRRQAAERAAI
NAPMQGTAADIIKKAMISIAEWIEREASDDITMIMQVHDELVFEVDVTKAETLKLKVCEL
MAAAADLHVPLLAEAGIGDSWEQAH
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaaattgctgaaaatcccttgatccttgtggatggatcttcttatctctatcgt
gcctattatgcacctccacatctgaccaattctaagggtgaagccaccggtgccgtctat
ggcgtggtcaatatgttgcgtagtctgctcagtaaattccaaccgcagcaaatggcagta
gtgtttgatgccaaaggaccgacattccgcaatgcaatgtatgaacagtacaaagctcat
cgtccaccgatgccggatgatcttcgcagtcagattgcaccgctgcaccagattattaaa
gccttaggtttgccgctgatatgtgaatcaggagtcgaagccgatgatgtaattgggaca
ttggcattaagagcgagtaaagctggacgcgccattctgatcagtacaggcgacaaggat
atggcgcagctggtcgatgacaatattactcttatcaacaccatgaccgacaccattatg
ggccccgccgaagtctgcgaaaaatttggcgtgggcccagacaagattatcgatttgctg
gccttgatgggtgacaaagccgataacattccgggattacctggtgtgggagaaaaaacc
gccttggcaatgctgcaaggagccggcagcgtgtcacacctcctggcagaacctgagtgt
gtcactaccatggcgtttcgtggtgccaagtccatggccgccaaaatcagtgaaaacgcg
gcgatattggagctatcctatcaactggccaccatcaaaactgactgtgaattagagctg
gactggcagcaactgaacattgaagcacccgaccgcgatacactgataaaactctacgga
gaaatggaattcaaacgttggctgggggaagtcctggaaaatcgtttgccacatccacag
cgagagctcaccagtatcggtgcggctgcaactgttgcgccacaggcaccagaacccgta
gagattgaagccaactacgaaacgattctcacagaagccgcattggctcgctggttggaa
aagctcatgcaagcccctttgatggccatagacaccgaaaccaccagtcttaattacatg
gatgccgagctagtcggtctttcttttgccgtcaatgccggggaagcagcttatctgcca
gttgcccacgattatgacggggcaccaacacagctcaccaaagattatgtgttatcccaa
ttaaagccgttgctggaaaatcctcaaatccgcaaagtcggtcagaatctcaaatatgac
atgagcattctggccaatgccggtatcaagctgcaaggcattcagtttgataccatgctg
gaatcctacgtgttcaattctgtcgcttcccgtcacgatatggatggcctggcactgaaa
tatctcggctataagtgtatcagttttgaagatatcgccggtaagggcgctaaacagctg
acatttaatcagattccattagatattgccgcgccttacgctgccgaagacgcagatatt
acgctgcgactgcaccagcatttgtggccgagactggagaaagagcaaggtctgccgcaa
gtattcaacgaactcgaactgccgttgatcccagtgttgtcacaaatcgaacgtaacggc
gtactgatcgataccatgctgctgtcacaacaaagtgatgaactcgcccgcaaaatcgat
caattagaactgaaggcgtatgagattgccggtgagcaatttaacctaggttcccccaag
cagctacaagagttattttttgaaaaactgggctacccggtcatcaaaaaaacgcctaaa
ggagcgccttcgactgcggaagaagtgttggtggaactcgcgcttgactatccgctcccc
aaaattattctggaacatcgcagcctgaccaaactgaagagtacttatactgataaatta
ccgttaatggtgaatggcaaaaccggcagagtacacaccagttaccatcaggctaatgcc
gctaccggtcgcttgtcatcgagtgatcctaacttgcagaatattccggtgcgaaccgaa
gaaggccgcaagatccgtcaggcgtttattgcaccgactggccgcaaaatcctcgctgcc
gactactcacaaattgaactgcggatcatggcacatctgtcagaggatgcagggctgctg
aaagcctttgccgaaggcaaagatattcatcgggccacagccgcagaagtatttgatgtt
gcctttgaaaccgtcacatccgaacaacgacgccgtgccaaggctgtgaattttggtctg
atttacggcatgtcggcctttggtctatctcggcaactggatattccgcgcaatgaagcc
caaagctatatcgatatttactttaagcgctatccaggggtgctgaaatatatggaacaa
acccgagcactggcagctgagcaaggttatgtctccaccctgtttggccgtcgattgtac
ctgccagagattcgtgatcgtaacgccatgcgacgccaggcggcagaacgggccgcgatc
aacgcaccgatgcagggcacggccgccgatattatcaagaaagcgatgatcagcattgct
gagtggattgaacgggaagccagtgacgatatcaccatgatcatgcaagttcacgatgaa
ctggtctttgaagtagatgtaacaaaagccgaaacactcaaacttaaggtgtgtgaactg
atggcggcagcggcagatttgcacgtaccactgcttgctgaagcaggtattggtgatagc
tgggaacaggcccattga
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