Picosynechococcus sp. PCC 7003: AWQ21_06220
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Entry
AWQ21_06220 CDS
T05991
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
syl
Picosynechococcus sp. PCC 7003
Pathway
syl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
syl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AWQ21_06220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
syl03400
]
AWQ21_06220
Enzymes [BR:
syl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AWQ21_06220
DNA repair and recombination proteins [BR:
syl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AWQ21_06220
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Mfd_cyano
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ANV84009
LinkDB
All DBs
Position
1300763..1304251
Genome browser
AA seq
1162 aa
AA seq
DB search
MTFSSVVRFLSRAALTAELTQKLQTQGELALSGLPRLPKGLLASSLAQLQEKNLLVVCAT
LEEAGRWAAQLEAMGWGQVLFYPTSEASPYEAFDPESEMIWGQMQTLGAIAYGQSSAVGK
GMVVVTTERALQPHLPPQAIFRDYCLTLLPGAELDHSEAIATQLTRLGYERVNIVETEGQ
WTRRGDIVDIFPVSGELPVRLDFFGDQLESIREFDPNSQRSLDKVDQLVLTPTAWAPLIG
QQILDPADLPLTPEEKEQWGEGVYPEGMQRFLGVAFADQVASILAYLPENTLVAIDELSQ
CLAHGDRTYETSEAQWQLLNGESPLPKVHRRVQENFDQVSQRYQKITLTELDDVSEASIN
LSSRPVPITPHQFGKLAEILRGKREIYSTITLDKYNAWLVSAQPTRSVSLLQEHDCAAQF
IPNPRDYPAIEKHQRQGTAIALKYKGQAELEGFILPTFRIAVVTDREFYGQHALTTFGYI
RKRRRAASKTVDVNKLNPGDYIVHKSHGIGRFIKIETLQSREYLVLKYADGILRIPADSL
DTLSRYRHTAKGRPELHRMGGKTWEKTKAKVRKSVKKLAVDLLKIYAQRAEMKGTTYPSD
APWQQEMEDSFPYQATPDQLKAVQDIKRDLESDRPMDRLVCGDVGFGKTEVAIRAIFKVV
TGGHKQVALLAPTTILTQQHYHTLKERFSPYPINIGLLNRFRTASERKDILERLHRGELD
IVVGTQQLLGKDVQFKDLGLLVVDEEQRFGVNQKEKIKALKTKVDVLTLSATPIPRTLYM
SLSGIREMSLITTPPPSRRPIQTHVSRHNPEIIRTAIRNELDRGGQIFYVVPRVEGIETI
ATQLQEMIPSARVAIAHGQMNEADLETTMLTFNNGEADILLCTTIVESGLDIPRVNTIIV
EDAQKFGLSQLYQLRGRVGRSGIQAHAWLLYPSQGDLTEKARKRLRALQEFSQLGSGYQL
AMRDMEIRGVGNLLGAEQSGQMEAIGFDLYVEMLQDCISEIRGQEIPQVDNCQVDLRLTA
FIPSNYITDGDQKLDAYRLITQANSKPELMQIAADWGDRYGKLPSSVEQLLQVIELKMIA
KSLGFSRIKPEGKQNIVLETPMEEPAWQRFAEKLPSHLQSRFVYTSKKVTVRGLGAIKPQ
QQLDSLIEWLGRMQGVLEEAGV
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atgactttttcttcggttgttcgttttttgagccgtgctgccctcacagcagaattaacc
caaaagctccaaacccaaggggaactcgctttaagtggtctgcccagactccccaaagga
ctgttggcctcaagtttggcgcaattgcaggagaaaaatttgttggtggtctgtgccacc
ctcgaggaagccggacgttgggccgcccagttagaggccatgggttggggccaggtactg
ttttatcccacctcggaagcgtcgccctacgaagcttttgatccagaatcagagatgatt
tgggggcagatgcaaaccctaggggcgatcgcctatggtcagtcatctgctgtgggtaag
gggatggttgtggtgacaacggagcgcgccctccagccccatctgccgccccaagcgatt
ttccgggattattgcttgaccttgctgccaggagcagaacttgatcattctgaggcgatc
gccacccagttaacgcgcctcggctatgagcgggtgaacatcgtcgaaaccgaaggccag
tggacccgtcggggcgatattgttgatatttttccggtgtcgggggagttgccggtacgt
ttagattttttcggtgatcagttagaaagcatccgggagtttgaccccaacagccaacgt
tccctcgataaagtagaccaactggttttgacccccacggcctgggcgcctttaattggt
caacaaatcctcgatccggcagatttaccgctaaccccagaggaaaaagaacaatgggga
gaaggtgtttatcctgaaggaatgcaacgctttttgggggtcgcctttgcggatcaggtg
gcctcgatcctggcgtatctcccagaaaatacgttggtggccattgatgaattgtcccaa
tgtcttgcccatggcgatcgcacctacgaaactagcgaggcccagtggcagttgctcaat
ggcgaatctcccctacccaaagttcaccgcagggtgcaggaaaattttgaccaggttagc
caacggtaccaaaaaattaccttgacagaactcgatgatgtcagtgaagccagcatcaac
ctatctagtcgtccggtaccgattacaccgcaccagttcggtaaattggcagaaattttg
cgcggtaaacgggaaatctatagcaccattacccttgataaatacaacgcttggctggtt
tcggctcaacccacacgctccgtttccctgctccaggaacatgactgcgccgcccagttc
atccccaatcctagggattatcccgccatcgaaaaacaccaacgccaaggcacggcgatc
gccctcaagtacaagggccaagcagaactagaaggcttcattttacccacctttagaatc
gccgttgttaccgaccgagaattctatggccaacacgccctcactacctttggctacatc
cgaaaacgtcgccgggccgcctcaaaaaccgttgatgttaataaactcaatcccggtgat
tatattgtccacaaaagccatggcattggtcgctttattaaaattgaaaccctgcaaagc
cgggaatatttagtcctcaaatatgccgatgggatcctcagaattcccgcagattcttta
gataccctgtcccgctatcgccacaccgctaagggacgcccggaactccaccggatgggc
ggcaaaacctgggaaaaaaccaaggccaaggtcagaaagtccgttaaaaagttagccgtt
gatctgttgaaaatttatgcccaacgggcggaaatgaagggcacaacctacccaagcgat
gccccctggcaacaggaaatggaggattctttcccgtaccaagcgaccccagaccaactg
aaggcggtgcaggatattaagcgggatctcgaaagcgatcgcccaatggatcggctcgtc
tgtggcgatgtgggtttcgggaaaacagaagtggcaatccgggccatttttaaagtggtc
accggtggccataaacaggtggcgttattggcacccaccacaattttgacccaacagcac
taccacaccctaaaggaacgcttttccccctatccgattaatattggcctgttaaaccgc
ttccgcaccgcctccgaacgcaaggacattttggagcggctccacaggggcgaactagac
atcgttgtcggtacccaacaactcctcggcaaggatgtgcaatttaaggatctaggcttg
ctcgtagtcgatgaagaacaacgctttggggtgaatcaaaaggaaaaaatcaaagccctc
aaaacgaaggttgatgttttgacgttgtccgcaaccccgattccgcgaaccctgtatatg
tccctgtccggtattcgggaaatgagtttaatcacgacgccaccgccctcccgtcgcccg
atccaaacccatgtgtctcgccataaccccgaaattatccgcactgccattcgcaacgaa
ttagaccggggcggacaaattttctatgtggtgccccgtgtcgaagggattgagaccatt
gccacccaattacaagaaatgattccctcggcgcgggtggcgatcgcccatgggcagatg
aacgaagccgatctcgaaacgacgatgttgacctttaataacggcgaggcggatattctt
ctctgtacgactatcgttgagtctggactcgatattcctcgggtgaacacgattatcgtt
gaagatgcccaaaaattcggtctttcccaactctatcaactgcgcggtcgggtgggacgt
tccggcatccaggcccatgcgtggctcctttatcccagccaaggagacctcaccgaaaaa
gcccgaaaacggctgcgggccttgcaagagtttagtcaactgggttctggctatcaattg
gcgatgcgggatatggaaattcgcggggtgggtaatctcctgggggcagaacagtccggg
caaatggaggccattggttttgatctatacgtagaaatgctccaggattgcattagtgaa
attcgcggccaggaaattccccaggtggataattgccaggtggatctacggctcacggcc
tttattccgagtaactacatcaccgatggtgaccaaaaacttgatgcctatcgtctgatt
acccaggccaactccaaaccggaactgatgcaaattgccgccgattggggcgatcgctac
ggtaaattaccctcctctgtcgaacaactgctccaggtcattgagctaaagatgattgcc
aagtccctcggattctcgcgcattaaacccgaaggcaaacaaaatatcgtcctcgaaacg
cccatggaggaacccgcctggcagcgcttcgccgaaaagttaccatcccatctccagtcc
cgctttgtgtacacctccaaaaaagtgacggtgcggggtctaggggcaataaagccccaa
caacaattggatagcctcatcgagtggctcggcagaatgcaaggagtgttagaggaagcc
ggggtataa
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