Picosynechococcus sp. PCC 7003: AWQ21_09975
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Entry
AWQ21_09975 CDS
T05991
Name
(GenBank) DNA-directed RNA polymerase subunit beta''
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
syl
Picosynechococcus sp. PCC 7003
Pathway
syl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
syl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AWQ21_09975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
syl03021
]
AWQ21_09975
03400 DNA repair and recombination proteins [BR:
syl03400
]
AWQ21_09975
Enzymes [BR:
syl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AWQ21_09975
Transcription machinery [BR:
syl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AWQ21_09975
DNA repair and recombination proteins [BR:
syl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AWQ21_09975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_4
RNA_pol_Rpb1_3
RPOC_hybrid
Apocytochr_F_C
RPN1_C
Motif
Other DBs
NCBI-ProteinID:
ANV84683
UniProt:
A0A1B1TQQ6
LinkDB
All DBs
Position
complement(2084530..2088525)
Genome browser
AA seq
1331 aa
AA seq
DB search
MTKEKPAVFYNRIIDKGRLKKLMSWAYTSFGSAHCATMADELKTLGFRYATQAGVSISVD
DLQVPPIKRQMLDSAEQEIKTTEARYSRGEITEVERFQKVIDTWNSTSESLKDEVVKNFR
ETNPLNSVYMMAFSGARGNLSQVRQLVGMRGLMADPQGEIIDLPIKTNFREGLTVTEYII
SSYGARKGLVDTALRTADSGYLTRRLVDVSQDVIVREEDCGTARGLKLRAMTDGEREQIS
LEDRLFGRVLNADVVDPKTGEVIAQRNQDIDADLAKKIATTVKEVEVRSPLTCEAARSVC
RKCYGWSLAHGHMVDMGEAVGIIAAQSIGEPGTQLTMRTFHTGGVFTKEAARTIKASKAG
TIQFKDGLSTRRMRTPHGDEVEQVEVAGTLVLKPSDNGKMVSHALSPGSFVLVAEGASVK
KGDLLVEVGAGQKTQKSTERATKDVSSDLAGEVLFDNLIAEEKTDRQGNTTRSAQRSGLM
WVLAGDVYNLPAGAEPVVENGTHVNVGDILAETKLVSLSGGVVRLIPNSREIEIVTASVL
LDEAKVLHETGGGSEQYVIETSKGDQFLLKTAPGTKVQNNANIAELIDDRYRTTTGGIIK
YAGVEVAKGTKKQGYEVLKGGTLLWIPEETHEVNKDSSLRIVEDGQYVEAGTEVVKDIFS
QSAGVAEVIEKNDILREVIIKPGELHLTEEAIADKYHEQLIQPGEEVIPGVTIDKLSYGE
KVISTEGVALLVRPVEEFQVEDTPVEPSQGSINEQGAGRNIELHSVQRLFFKDGERVKSV
DGVSLLSTQLIIEIGAIEGEDEDVLANLYADIELQDDPTDDEVKRLQLVILESLILRRDS
DSDPFGGQVQTRLMVEDGQEILPGAVVARTEIQCKEPGEVRGIRSGQEAIRRLLIVRDSD
RQTLAIDGKAKVKENTLVVAGTEIAEGVVIEDSAQVLKVSDKEIVLRHARPYRVSGGAVL
HIDEGDLVQRGDNLVLLVFERAKTGDIIQGLPRIEELLEARKPKEAAVLARRPGTCQVEY
LDDETVDVKVIEDDGVISEYPVSLNQSVMVVDGQRVGPAEALTDGLNNPHEILEIFFDYY
AESKGIYDAALIGLRESQRFLVEEVQRVYQSQGIDISDKHIEVIVRQMTAKVRIDDGGDT
TMLPGELIELRQVEQVNEAMSITGGAPARYTPVLLGITKASLNTDSFISAASFQETTRVL
TEAAIEGKSDWLRGLKENVIIGRLIPAGTGFASQNDFVDEGTSRSPNGYSNVVTNDNGAG
LSSRSYDDLDGSEILDDQTARAFTEGKSNRKDIISGDELISDDTPIPSDVQGKAPVIDDD
AMIDDNWMKDQ
NT seq
3996 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaggaaaaacccgccgttttttataaccgcatcatcgataaaggacgcctgaaa
aaactgatgtcctgggcctacaccagttttggttctgcccactgtgccaccatggccgac
gaattgaagacccttggttttcgttacgcaacccaggctggtgtgtcgattagtgtcgat
gacctccaggtgcctcccatcaagcggcagatgctagacagtgccgaacaagaaattaaa
accacagaagctcgctattcccgtggtgaaatcactgaggttgaacgtttccaaaaagta
attgacacctggaacagtacttccgaatccctcaaagatgaagtggtcaaaaacttccgg
gaaaccaaccccctcaactccgtctacatgatggcattcagtggtgcccggggtaatctt
tcccaggtgcgtcagttggttgggatgcgtggtttgatggcggatccccaaggggaaatc
attgacttgccgattaaaaccaacttccgggaaggtctcacagtcacggaatacattatt
tcttcctatggtgcccgtaaaggtctggtagataccgcccttcgtacagcagactctggt
tatttgacccgacgtttggtggatgtttcccaggatgtgattgttcgcgaagaagactgc
ggcaccgcccggggcctcaaactccgcgccatgaccgatggtgaacgcgaacagatttcc
ctcgaagaccgcctctttggtcgggtgctcaatgccgatgtggtcgatcccaaaacagga
gaagtcattgcccagcggaatcaagatattgacgcggatctggcaaagaaaattgcaaca
acggtaaaggaagtagaagtgcgatcgcctttgacctgtgaagcagcccgttccgtctgt
cgcaagtgctatggttggagtctcgcccatggtcacatggttgatatgggagaagccgtc
gggattattgcggcccaatccattggggaacccggcacccagttaaccatgcggactttc
cacacagggggggtatttaccaaggaagcagcccggacgatcaaggcttccaaagctggt
acgattcagtttaaagatggcctcagcactcgacggatgcggacgccccacggggatgaa
gtagaacaggtagaagtagccggcaccctggtactgaagcccagtgataacggcaaaatg
gtgagccatgccctctcccctggttcctttgtcctggtagcagaaggcgcttctgtcaag
aaaggcgatctgctggttgaggttggcgcgggtcagaaaacccaaaaatctaccgagaga
gcgaccaaagacgtttcttccgatctagctggggaagttctgtttgacaacctcatcgca
gaagaaaaaactgaccgtcaaggcaatacaacccgctccgcccaaagaagtggtttgatg
tgggttctagctggggatgtctataatctgccggctggggctgaacctgtcgttgaaaac
ggcacccatgtcaatgtgggcgatattctggctgagaccaaattagtttccctctccggt
ggtgttgtacgactcattcccaatagccgagagattgaaattgtcacggcttcggtgctc
ctagatgaggcgaaggtgctccatgaaactggcggcggctcagagcaatacgtcattgaa
acctctaaaggggatcagttcctcctgaaaacagcccctggcacgaaggttcaaaacaat
gccaacatcgccgaactcatcgatgatcgctaccggacgaccaccggggggatcatcaaa
tatgctggcgtagaggtggccaaaggcacgaaaaaacagggttatgaagtcctgaaaggg
ggcacactcctctggatcccggaagaaacccacgaggtcaacaaagatagctcgctccgt
atcgtcgaagatggccagtatgtcgaagcgggaacggaagtcgttaaggacattttctcc
caatcggctggggtggcagaggtcatcgaaaagaatgacattctccgggaagtgattatt
aagccgggtgaattgcacctcaccgaagaggcgatcgccgacaaatatcacgaacaactg
attcagcccggtgaagaagttatccctggggtgaccatcgacaaactaagctacggtgaa
aaagtgatcagcaccgaaggggtggcccttcttgtccgtcccgtcgaggaattccaagtc
gaggatactccggttgaaccgtcccaaggttccattaacgaacagggagccggccggaat
atcgaactccattccgtccagcgcctatttttcaaagatggcgaacgggttaaatccgtg
gatggcgtttctctcctgagcacccaattgattatcgaaattggcgctattgaaggggaa
gatgaagacgtcctcgcaaacctctatgcggacattgaacttcaagatgatcccaccgat
gacgaagttaaacgtctgcagttggtgattcttgaatccttgattctccgccgtgattcc
gatagtgatccctttggcggccaagttcagacccgactcatggtcgaagacggccaagag
attttacccggtgcagtggtggcccgcacggaaatccaatgtaaagaacccggtgaagtt
cgggggattcgctctggtcaagaagcgattcgtcgtttattgattgtgcgcgatagcgat
cgccaaaccctagctatcgacggcaaagccaaggtcaaagaaaataccctggtggttgct
ggcaccgaaattgctgaaggcgttgtgatcgaagattccgcccaagtcctcaaagtcagc
gacaaagaaattgtcctccgtcacgctcggccttaccgtgtgtccggtggtgcagtcctg
cacatcgacgaaggtgatctcgtccaacggggtgacaatcttgttctactcgtctttgag
cgggcaaaaaccggggacatcatccagggtctcccccggatcgaagaattgctcgaagcc
cggaaacccaaggaagcagcagtgctcgcccgtcgtcctggtacctgccaagtcgaatac
cttgatgatgaaaccgtggatgtcaaagtcatcgaagatgacggtgtcattagcgaatat
ccggtcagcctaaaccaaagtgtgatggtggtcgatggtcaacgggttggccccgcagaa
gccctcaccgatggcttgaataatccccacgaaatcctggaaattttcttcgattactac
gctgagagtaaggggatctacgacgcggctttgattggtctccgggaatcccaacggttc
ttggtagaagaagtacagcgggtttaccagtcccagggcattgacatttctgataaacac
atcgaagtgatcgtgcgccagatgacggcaaaagtccgcatcgatgatggtggcgacacc
acaatgttgccaggggagttaatcgagctacgtcaagtagaacaggttaacgaagcaatg
tcgattactggtggcgcgccggctcgttatactccggtactcctggggattactaaagct
tccttgaacaccgacagctttatctctgcggcttccttccaagagaccacacgggtactc
accgaagcagctattgaagggaaatctgactggttgcggggcctcaaggaaaacgtgatt
atcggtcgcttgattccggcgggaacggggtttgcaagccaaaatgatttcgtagacgaa
gggacttcacggtctcccaatggctacagcaatgttgtgactaatgacaatggtgctggg
ttgtcgagccgctcctacgatgatcttgatggcagcgaaattcttgatgatcaaacagcg
cgagcctttacggaaggaaaatcgaatcgcaaggacattatctctggcgatgaactaatt
tctgatgatacgccgattccgtcggacgttcaggggaaagcgcctgtaattgatgatgat
gcgatgattgatgataactggatgaaggatcaataa
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