Synechococcus sp. LTW-R: H0O22_12560
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Entry
H0O22_12560 CDS
T11767
Name
(GenBank) DNA-directed RNA polymerase subunit gamma
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sylt Synechococcus sp. LTW-R
Pathway
sylt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sylt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
H0O22_12560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sylt03021
]
H0O22_12560
03400 DNA repair and recombination proteins [BR:
sylt03400
]
H0O22_12560
Enzymes [BR:
sylt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
H0O22_12560
Transcription machinery [BR:
sylt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
H0O22_12560
DNA repair and recombination proteins [BR:
sylt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
H0O22_12560
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
Cas9-BH
DUF8118
Motif
Other DBs
NCBI-ProteinID:
QNG29508
LinkDB
All DBs
Position
2275255..2277159
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AA seq
634 aa
AA seq
DB search
MTNSNLRTENHFDYVKITLASPERVMQWGQRTLPNGQVVGEVTKPETINYRTLKPEMDGL
FCEKIFGPSKDWECHCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGFIKLAAPVSHVWY
LKGIPSYVAILLDMPLRDVEQIVYFNCYVVLDQGDHKDLTYKQLLTEDEWLEIEDEIYAE
DSEIENEPTVGIGAEALKQLLEDLDLPVVAEQLREEIAGSKGQKRAKLIKRLRVIDNFIA
TGARPEWMVLDVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPE
IIVRNEKRMLQEAVDALIDNGRRGRTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDY
SGRSVIVVGPKLKMHQCGLPKEMAIELFQPFVIHRLIRQNIVNNIKAAKKLIQRADDEVM
QVLQEVIDGHPIMLNRAPTLHRLGIQAFEPKLVDGRAIQLHPLVCPAFNADFDGDQMAVH
VPLAIEAQTEARMLMLASNNILSPATGDPIITPSQDMVLGAYYLTAEQPASNKPEFGDRS
RTFAGLRDVLNAFEDKHLTMHDWVWVRFNGEVDTEGEAKEPVQQETLSDGTRIEQWRFRR
DRLDEDGALISRYLLTTVGRVVMNSTIIDAVAAA
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgaccaacagcaatctccgcaccgaaaaccacttcgattacgtcaagatcacgctcgct
tcccccgagcgggtcatgcagtgggggcagcgcacgctgcccaacggtcaggtggtgggc
gaggtcaccaagcccgaaaccatcaactaccgcaccctgaagcccgagatggacgggctt
ttctgcgagaagatttttggcccctccaaagactgggaatgccactgcggtaagtacaag
cgggtgcgccaccgcggcatcgtctgcgagcgctgcggtgtggaggtcacggaaagccgg
gtgcgtcgtcaccggatgggcttcatcaagctcgccgctccggtgtcccacgtctggtac
ctgaagggcatccccagctacgtggccatcctgctggacatgcccctgcgggatgtcgag
cagattgtttacttcaactgctacgtggtgctcgaccagggcgaccacaaggacctgacc
tacaagcagctgctcactgaagacgagtggctggagatcgaagacgagatctacgccgaa
gactccgagatcgagaacgagcccaccgtgggtattggcgctgaggcgctcaagcaactg
ctcgaggacctcgatctccccgtggtggccgaacagctccgcgaagagatcgccggttcc
aagggtcagaagcgcgccaagttgatcaagcgcctgcgcgtgatcgacaacttcatcgcc
accggtgcccgtcccgagtggatggtcctggatgtcatcccggtcatcccccccgacctg
cgcccgatggtgcagctcgacggcggtcgctttgccacctccgacctcaacgacctctac
cgccgtgtgatcaaccggaacaaccggttggcccgtctgcaagagatcctcgcccccgaa
atcatcgtccgtaacgagaagcggatgctccaggaggccgttgatgccctgatcgacaac
gggcgccgtggtcgcaccgtggtgggtgccaacaaccgtccgctcaagtcactgagcgac
atcattgagggtaagcagggtcgcttccgtcagaacctcctcggtaagcgcgtcgactac
tccggtcgttccgtgatcgtggtgggtccgaagctgaagatgcaccagtgcggtctgccc
aaggagatggcgatcgagctgttccagccgttcgtgatccatcgcctgattcgtcagaac
atcgtcaacaacatcaaggccgcgaagaagctgattcagcgcgccgacgatgaggtgatg
caggtgctgcaggaggtgatcgatggtcacccgatcatgctgaaccgtgcaccaaccctg
caccgtctcggcattcaggccttcgaacccaagctggtggatggccgcgccattcagttg
caccccctggtctgccccgccttcaacgctgactttgacggtgaccagatggccgtccac
gtcccgctggcgattgaggcccagaccgaggcccgcatgttgatgctggcgagcaacaac
atcctgtcccctgcaacgggtgatccgatcatcacgccttctcaggacatggtgttgggt
gcctattacctgaccgccgagcagccggcgagcaataagcctgaatttggcgaccgcagc
cgtaccttcgcgggcctgcgtgacgtgctgaatgccttcgaggacaagcacctgaccatg
cacgactgggtgtgggtgcgcttcaacggtgaggtcgataccgaaggtgaggccaaggag
cctgtgcagcaggagaccctcagcgatggcactcggattgaacagtggaggttccgtcgt
gatcgcctcgatgaggacggtgctctgatcagccgttatctgttgaccaccgttggacgc
gtggtgatgaacagcacgatcatcgacgcggtggcagccgcctga
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