Symbiopectobacterium purcellii: K6K13_22525
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Entry
K6K13_22525 CDS
T07463
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sym
Symbiopectobacterium purcellii
Pathway
sym03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sym00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
K6K13_22525 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sym03021
]
K6K13_22525 (rpoC)
03400 DNA repair and recombination proteins [BR:
sym03400
]
K6K13_22525 (rpoC)
Enzymes [BR:
sym01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
K6K13_22525 (rpoC)
Transcription machinery [BR:
sym03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
K6K13_22525 (rpoC)
DNA repair and recombination proteins [BR:
sym03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
K6K13_22525 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QZN95857
LinkDB
All DBs
Position
complement(4843733..4847956)
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLEKRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG
LASLHARVKVRITEHEKNAQGEWVAKTSLIDTTVGRSILWMIVPKGLPYSIVNQALGKKA
ISKMLNTCYRVLGLKPTVIFADQIMYTGFAYAARSGSSVGIDDMVIPAKKVEIINEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSTETVINRDGVEERQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRERVL
GRVTAEDVLKPGTADILVARNTLLDEQWCDLLEENSVDAVKVRSVVSCETDFGVCAKCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSLKL
SNAKFVKNAAGKLVITSRNTELKLIDEFGRTKESYKVPYGAVMGKGNGDEVTGGETVANW
DPHTMPVITEVGGSIRFTDMIDGQTITRQTDELTGLSSIVVLDSAERTGGGKDLRPALKI
VDAKGNDVLIPGTDMPAQYFLPGKAIVQLEDGTQIGAGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEITGIISFGKETKGKRRLVISPLDGSDAYEEMIPKWRQLNVFE
GERVERGDVVSDGPESAHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKGTIASAGSSEFLEGEQAEVSRIKIANRQLEADGKIAATYHRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRHAGEVPV
VAPVSADEASANLAELLNAGFGSSDDE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaagcgcaaaccaagaccgaagagtttgatgcgatc
aaaattgcgctggcatcgccagacatgattcgttcctggtctttcggtgaagttaaaaag
ccggaaaccattaactaccgtacgttcaaacctgaacgtgacggtctgttctgcgcccgt
attttcgggccagtgaaagactatgagtgcctgtgcggtaagtacaagcgcttgaaacac
cgtggcgttatctgtgagaaatgcggcgttgaagtgacccaaaccaaagtgcgccgtgag
cgcatgggccacatcgagctggcgtctccgacggcgcacatctggttcctgaaatcgctg
ccgtcccgtatcggtttgctgctggatatgccgctgcgcgatatcgaacgcgtgctgtac
ttcgaatcctatgtggtgattgaaggcggcatgaccaacctggaaaaacgtcagatcctg
actgaagagcaatatctggacgcgttggaagagttcggtgacgaattcgacgccaagatg
ggtgccgaagcgatccaggccttgttgaaaaacatggatctggaacaggaatgcgaacag
ctgcgcgaagagttgaacgaaaccaactctgaaaccaagcgtaaaaagctgaccaaacgc
atcaagctgctggaagcgttcgtacagtctggcaacaagccggagtggatgatcctgacc
gtgctgcctgtgttgccgccggatctgcgtccgctggttccgctggacggtggtcgtttc
gcaacctcagatctgaacgatctgtatcgtcgcgtgatcaaccgtaacaaccgtttgaaa
cgtctgctggatctggcggcacccgatatcatcgtacgtaacgaaaaacgtatgctgcaa
gaagcggtagatgccctgctggataacggtcgtcgcggtcgtgcgatcaccggttccaac
aagcgtccgctgaaatctttggccgacatgatcaaaggtaagcagggtcgtttccgtcag
aacctgctcggtaagcgcgtggactactccggtcgttctgttattaccgtaggtccgtac
ctgcgtctgcaccagtgcggtctgccgaagaaaatggcactcgaactgttcaaaccgttc
atctatggcaagctggaactgcgtggtctcgctaccaccatcaaagccgccaagaaaatg
gttgagcgcgaagaagccgtggtttgggatatcctggatgaagttatccgcgaacacccg
gtactgctgaaccgtgcgccgacgctgcaccgtttgggtatccaggcattcgaaccggtt
ttgatcgaaggtaaagccattcagctgcacccgctggtgtgtgcggcgtataacgccgac
ttcgacggtgaccagatggctgttcacgtaccgctgacgctggaagcccagttggaagcg
cgtgcgctgatgatgtccaccaacaacattctgtctccggcgaacggcgaacctatcatc
gttccgtctcaggacgtggtattgggtctgtactacatgactcgtgactgtgttaacgcc
aaaggcgaaggcatggtgttgaccggtccgaaagaagcagaacgtatctaccgtgcgggt
ctggcctcactgcatgcgcgcgttaaagtgcgtatcactgagcatgagaagaatgcgcag
ggtgagtgggtggctaaaaccagcctgatcgacaccactgtcggccgttccatcctgtgg
atgatcgtgccgaaaggtctgccgtactctatcgttaaccaggcgctgggtaaaaaagcc
atctccaagatgctcaatacctgttaccgcgtgctggggctgaagccgaccgttatcttc
gctgaccagatcatgtacaccggttttgcctatgcagcgcgttctggctcttccgttggt
atcgacgatatggtcatcccagcgaagaaagtggaaatcatcaacgaagcggaagccgaa
gttgctgaaatccaggaacagttccagtctggtctggtaaccgccggcgaacgttacaac
aaagtcatcgacatttgggccgctgctaacgagcgcgtggccaaagcgatgatggaaaac
ctctcgaccgaaaccgttatcaaccgtgatggcgtagaagagcgtcaggtttcctttaac
agcatctttatgatggctgactccggtgcgcgtggttctgcggcacagattcgtcagctg
gccggtatgcgtggtctgatggcgaagccagatggctccatcatcgaaacgccgatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctccacgcacggtgcgcgt
aaaggtttggcggataccgcgttgaagacagcgaactccggttacctgacccgtcgtttg
gttgacgtggcacaggatctggtagtgaccgaggacgattgcggcacgcacgaaggcatc
atgatgaccccggttatcgaaggtggcgacgttaaagagccgctgcgtgagcgcgtactg
ggtcgtgtaacggctgaagatgttctgaagccgggcaccgcggacattctggtggcacgt
aatacgctgctggacgaacaatggtgtgatctgctggaagaaaattctgtcgatgccgtt
aaagttcgctctgtagtaagttgtgaaaccgacttcggcgtgtgcgccaagtgctacggt
cgcgacctggcacgtggtcacatcatcaacaaaggtgaggccatcggggttatcgcagca
cagtccatcggtgaaccgggtactcagctgaccatgcgtacgttccacatcggtggtgcg
gcatcgcgtgcggcggctgaatccagcattcaggtgaaaaacaaaggtagcctgaaattg
tccaacgccaagttcgttaagaacgcggcgggcaagctggttatcacctcgcgtaacacc
gagctgaaactgatcgacgaattcggtcgtaccaaagaaagctataaagtgccttacggt
gcggtaatgggcaaaggcaacggtgacgaagtgaccggcggtgaaaccgtcgcaaactgg
gatccgcataccatgccagttatcacagaagtgggcggtagcattcgcttcaccgacatg
atcgacggccagacgattactcgtcagaccgacgaactgaccggtctgtcctccatcgtg
gttctggacagtgcagaacgtaccggtggcggtaaagatctgcgtccggcactgaaaatc
gttgatgccaagggtaatgacgtactgatcccaggtaccgacatgccggcacagtacttc
ctgccgggcaaagcgattgttcagttggaagacggtactcagatcggtgcaggtgacacc
ttggcgcgtattccgcaggaatccggcggtaccaaggacatcaccggtggtctgccacgt
gttgccgacttgtttgaagcgcgtcgtccgaaagagccggctattctggctgaaatcacc
ggtatcatctcgttcggtaaggaaaccaaaggcaaacgccgtttggtgatctcgccgctg
gatggtagcgatgcttacgaagagatgattccgaaatggcgtcagctcaacgtgtttgaa
ggtgaacgcgtagaacgtggcgatgtggtttccgacggtccggaatcagcgcacgacatt
ctgcgtttgcgtggtgtacatgcggtaacccgttatatcaccaacgaagtgcaggaagtt
taccgtctgcaaggcgttaagattaacgataaacacatcgaagttatcgtgcgtcagatg
ctgcgtaaaggcaccattgccagcgcgggcagttccgagttcctggaaggcgagcaggca
gaagtgtcgcgcatcaagatcgccaaccgtcagttggaagccgatggcaagattgcagct
acgtaccaccgtgacctgctgggtatcaccaaggcatctctggcaaccgaatccttcatc
tctgcggcctcgttccaagaaacgacgcgcgtgttgacggaagcagccgttgcgggtaaa
cgcgacgaactgcgcggtctgaaagagaacgtcatcgtgggtcgtttgatcccggccggt
actggttatgcgtaccaccaggatcgcatgcgtcgccgtcatgcgggcgaagtgccagtc
gtggcgccagtgagtgcagatgaagcttctgcaaacctggctgaactgctgaacgcaggc
tttggtagcagcgacgacgaataa
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