Synechocystis sp. PCC 6803: slr0083
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Entry
slr0083 CDS
T00004
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase; DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
syn
Synechocystis sp. PCC 6803
Pathway
syn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
syn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
slr0083 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
syn03019
]
slr0083 (deaD)
03009 Ribosome biogenesis [BR:
syn03009
]
slr0083 (deaD)
Enzymes [BR:
syn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
slr0083 (deaD)
Messenger RNA biogenesis [BR:
syn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
slr0083 (deaD)
Ribosome biogenesis [BR:
syn03009
]
Prokaryotic type
rRNA helicases
slr0083 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
ResIII
CMS1
HEM4
AAA_19
Cas3-like_C_2
Flavi_DEAD
DUF7739
AAA_30
Fe-ADH
Motif
Other DBs
NCBI-ProteinID:
BAA10556
UniProt:
Q55804
LinkDB
All DBs
Position
2887644..2889122
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AA seq
492 aa
AA seq
DB search
MTNTLTSTFADLGLSEKRCQLLADIGFEAPTQIQTEAIPLLLSGRDMLAQSQTGTGKTAA
FALPLMDRIDPEGDLQALILTPTRELAQQVAEAMKDFSHERRLFILNVYGGQSIERQIRS
LERGVQIVVGTPGRVIDLIDRKKLKLETIQWVVLDEADEMLSMGFIDDVKTILRKTPPTR
QTACFSATMPREIKELVNQFLNDPALVTVKQTQSTPTRIEQQLYHVPRGWSKAKALQPIL
EMEDPESAIIFVRTKQTAADLTSRLQEAGHSVDEYHGNLSQSQRERLVHRFRDGKIKLVV
ATDIAARGLDVNNLSHVVNFDLPDNAETYIHRIGRTGRAGKTGKAIALVEPIDRRLLRSI
ENRLKQQIEVCTIPNRSQVEAKRIEKLQEQLKEALTGERMASFLPLVRELSDEYDAQAIA
AAALQMIYDQSCPHWMKSDWEVPEVDFNKPVLRRGRNAGGGQNKSGGGYQGKPGKPRRSS
GGRRPAYSDRQQ
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgactaatactttgactagtaccttcgctgaccttggtctttctgaaaaacgttgtcaa
ctcttggccgacattggctttgaggctcccacccaaattcaaactgaagccattcccctg
cttttgagcggccgggacatgctggcccaatcccaaaccggcacggggaaaaccgccgcc
tttgccctacctttgatggaccgcattgacccagagggggacttgcaagccttaattttg
acccccacccgggaattggcccagcaggtggcggaagcaatgaaggacttttcccacgag
cgccgtctatttattttgaatgtgtacggtggtcaatccatcgagcggcaaattcgcagc
ctagaacggggtgtgcaaattgtggtgggcacccctggacgggtgattgacctaattgac
cgcaaaaaacttaaattagaaaccatccaatgggtggtgctggatgaagcggacgaaatg
ctgagcatgggcttcattgacgatgtgaaaaccattctgcgtaaaactccccccaccagg
cagaccgcttgtttttctgccaccatgccccgggaaatcaaagaattggtcaaccaattt
ttaaatgatcccgccctggtgaccgttaaacagacccaatccacccccacccgcattgag
cagcagctttatcacgtgccccgcggttggtctaaggctaaagcgctacaaccgattctg
gaaatggaagatcccgaatccgccattatttttgttcgtactaaacaaaccgccgcagac
ctcaccagtcgtttgcaagaagcgggccatagcgtggatgagtaccacggcaacctgagc
caatcccaacgggagcgtttggtgcaccgtttccgggatggcaaaattaagctggtggtg
gccacggacatcgccgcccggggtttagatgtgaataacctcagccatgtggtcaacttt
gatttacccgataacgctgaaacctacattcaccgcattggccgcaccggtcgggctggt
aagactggtaaggcgatcgccttggtggaacccattgaccgtcgtttactgcgatccatc
gaaaaccgtctgaaacaacaaattgaagtttgtaccattcctaaccgttcgcaggtggaa
gccaagcggattgaaaaactgcaggaacaactcaaggaagccctgaccggtgagcggatg
gcctccttccttcctttagtgcgggaattgagcgatgagtacgatgcccaggcgatcgcc
gctgctgctttacagatgatctatgaccagagctgtccccattggatgaaatccgattgg
gaagtgccggaagttgatttcaacaagcccgttctccgtcgtggccgcaatgctggcggt
ggccagaacaaaagtgggggtggttaccaaggtaaaccgggcaaaccccgtcgctccagc
ggtggccgtcgtcctgcctatagtgatcgccaacagtaa
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