Synechocystis sp. PCC 6803: slr0653
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Entry
slr0653 CDS
T00004
Symbol
rpoDI
Name
(GenBank) RNA polymerase sigma factor
KO
K03086
RNA polymerase primary sigma factor
Organism
syn
Synechocystis sp. PCC 6803
Brite
KEGG Orthology (KO) [BR:
syn00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
slr0653 (rpoDI)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
syn03021
]
slr0653 (rpoDI)
Transcription machinery [BR:
syn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
slr0653 (rpoDI)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
Sigma70_r4_2
BDHCT_assoc
Motif
Other DBs
NCBI-ProteinID:
BAA18672
UniProt:
P74565
Structure
PDB
PDBj
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All DBs
Position
3323275..3324552
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AA seq
425 aa
AA seq
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MTQTKEPLTKAESAELEQEIELSQYINTDDIDDDDIDVEDLEQEVAATEGKEKKVRKIRK
DAVKKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARQIADLLELELIRDNLTLQLERQPS
ELEWGKQVWKLETAKQRLVGDKKKEPKKKDIDSYLANPDNELSLENEWSQQPNKNFAAFR
RRLFLDRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK
FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIAEK
MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGETPEDEVSKNLLREDLENV
LDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSIL
KEYIR
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgacccagacgaaagagccactcaccaaagctgaatccgccgaactggagcaagaaata
gagctaagtcaatacattaacactgatgatattgacgacgatgatattgacgtagaggat
ttagaacaggaagtcgccgctacagaagggaaggaaaaaaaagtccggaaaattcgtaag
gacgcggttaaaaagaaaccctacaccgaagactcaatccgtatctatctccaggaaatt
ggccggattcgtctgctcagggccgaagaagaaattgaactagcccgtcaaattgccgac
ctcctcgaactcgagctaattcgggacaacctcacccttcaactagaacgccagccctcg
gaactggaatggggtaaacaggtctggaagttggaaaccgccaaacaacggttagtaggc
gacaagaaaaaagagccgaaaaagaaagatatagatagttacctcgccaatccagacaac
gaattaagtctggaaaatgaatggagccaacagcccaacaaaaattttgccgccttccgt
cgtcgtctttttctggatcgccgagccaaagacaaaatggtgcagtctaacctgcggcta
gtagtgtccattgccaaaaaatatatgaatcggggtctatcattccaagatctaattcag
gaaggttctctaggtttaatccgagctgccgaaaaatttgaccacgaaaaaggttacaaa
ttctccacctatgccacctggtggattcgccaagccatcacccgggcgatcgccgaccaa
tctcgcaccatccgcctccccgtccacctctacgaaaccatctcccgcatcaaaaaaacc
accaaactcctctcccaggaaatgcgacgtaaacccaccgaggaagaaatcgccgaaaaa
atggagatgaccatcgaaaaattacgcttcatcgccaaatccgcccaacttcccatctcc
ctcgaaacccccattgggaaagaagaggactcccgcctaggggacttcatcgaagccgac
ggcgaaacccctgaggatgaagtatccaaaaatctgctccgggaagacctggaaaatgtc
cttgacaccctcagcccccgggaacgagacgtattgcgtctacgctatggcctcgacgac
ggccgcatgaagaccctagaagagattgggcaaatctttaacgtcacccgggaacgcatc
cgtcagatcgaagctaaagccctgcggaaactgcgtcaccctaaccgcaacagcatcctc
aaggaatatatccgctaa
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