Synechococcus sp. CB0101: CB0101_01610
Help
Entry
CB0101_01610 CDS
T06409
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sync
Synechococcus sp. CB0101
Pathway
sync03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sync00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CB0101_01610 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sync03400
]
CB0101_01610 (mfd)
Enzymes [BR:
sync01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CB0101_01610 (mfd)
DNA repair and recombination proteins [BR:
sync03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CB0101_01610 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
UB2H
AAA_30
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QCH13802
UniProt:
A0A4P7ZQF1
LinkDB
All DBs
Position
complement(289867..293424)
Genome browser
AA seq
1185 aa
AA seq
DB search
MPLTALVRQLQQAPLTGEVLQRSQRDERLRMSGAGRGARALVSSALATAAEAPLLVVVPT
LEEAGRWAALLELMGWSSAQLYPTSEGSPYEPFDPTSEITWGQLQVLSELLDEERAASMA
IVATERALQPHLPPPAALKAQCLSLRKGDTVDLEELGETLTRLGYERVTSIEQEGSWSRR
GDIVDVFPVSAELPVRLEFFGEELEKLREFDPASQRSLDPIEVVRLTPSGYGPLIADALR
DGMPDGLDQLLSPEALEQLLEGGTPEGMRRLMGLAWSEPASLLSYLPANTLIAVDERRHC
LAHGQQWFDHANEHHAEVCAELGVELPAVLHRTPEQALSSTETFAGFDLAELHESDNHPN
SFDLASRPVPAYPNQFGKLAELIKGLQREKTRVWLLSAQPSRAVALLEEHDCITRFVPNS
GDQASIERLIEQNTPVALKTKGTAELEGLQLPAWKLALITDREFFGQQSLTATGYVRRRR
KAASRTVDPNKMRPGDFVVHRNHGIGKFIKLEKLAISGESRDYLVVQYADGLLRVAADQL
GSLGRYRATTEQPPDLNRMGGTAWSKAKERARKAVRKVALDLVKLYAERHQAAGFCFPAD
GPWQSELEESFPYEPTPDQLKAIADVKRDMEKPQPMDRLVCGDVGFGKTEVAIRAIFKAV
TAGKQVAMLAPTTVLAQQHWRSLSERFAPYPIKVSLLNRFRTAGERKAIQEGLGEGTVDV
VVGTHQLLGKGTAFKQLGLLVVDEEQRFGVNQKEKIKALRKDVDVLTLSATPIPRTLYMS
LSGVREMSLITTPPPLRRPIKTHLAALDEEAVRSAIRQELDRGGQIFYVVPRVEGIEDVA
EGLRLMVPGLRLLVAHGQMAEGELESAMVAFNAGEADLMLCTTIVESGLDIPRVNTILIE
DAHKFGLAQLYQLRGRVGRSGIQAHAWLFYPGDASLSEAARQRLRAIQEFAQLGSGYQLA
MRDMEIRGVGNLLGVEQSGQMETIGFDLYMEMLQESLAEIQGQDIPAVDDTQIDLPITAF
IPGDWIADNDEKMAAYRAAADCGSPDSLLQLATDWVDRYGAIPAPVISLLQLMELKLLAK
RCGFSRIKPEKPNIALETPMEEPAFRLLRQGLPQHLHGRLMFQAGSGTTSKVLARGLGVL
PMEKQVEELMNWLKQMAEQIPGADGLTDAQRAEQIQAKNEAVLSV
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atgcccctcaccgccctggtgcgacagctgcagcaggctccgctcaccggcgaagtgctg
cagcgcagccagcgcgacgagcggttgcggatgagcggagcgggacgaggcgcgcgggcc
ctggtgagcagcgccctggccacggccgccgaggcaccactcctggtggtggtgccaacc
ctggaggaggcgggccgctgggcggcgctgttggagctgatgggctggagcagcgcccag
ctgtatcccaccagcgagggcagcccctacgaaccgtttgatcccaccagcgagatcacc
tgggggcagctgcaggtgctcagcgagctcctcgatgaagagcgggccgcctcgatggcg
atcgtggccaccgagcgggccctccagccgcacctgcccccgccagcggcactgaaggcc
caatgcctgagcctgcgcaagggcgacacggtggatctcgaggagctgggcgaaacgctc
acacgcctgggctacgagcgcgtcacctccattgagcaggagggcagctggagccgccgc
ggcgacatcgtggatgtgttcccggtgagcgccgagctgccggtgcgcctggagttcttc
ggcgaagagctggaaaagctgcgggaatttgatcccgccagccaacgctccctggatccg
atcgaggtggtgcgtctcacccccagcggctatggcccgctgatcgccgatgccctgcgc
gacggcatgcccgatgggctggatcagctgctcagcccggaagcgttggagcaactactc
gaagggggcacccccgaaggaatgcgccggctgatgggtctggcctggagcgaaccggcc
tcattgctcagttacctgccggcgaacaccttgatcgccgtggatgagcggcgccactgc
ctcgcccacggccagcagtggttcgaccatgccaacgagcaccacgctgaggtgtgcgcc
gaactcggggtggagctaccggcagtgctgcaccgcacgcccgagcaggcgctgagcagc
acggagacttttgccggcttcgatctggcggagctgcacgagagcgacaaccaccccaac
agctttgatctagccagccggccggtgccggcctaccccaatcagttcggcaagctggcc
gagctgatcaaagggctgcagcgcgagaagacacgggtgtggctgctgtcggctcagccc
agccgcgccgtggccctgctggaagagcacgactgcatcacccggttcgtacccaactca
ggtgatcaggcctcgatcgagcggctgatcgagcagaacacgcccgtggccctcaaaacc
aagggcaccgctgagctcgagggcttgcagctgccggcctggaagctggcgctgatcacc
gaccgcgaattcttcgggcagcaatcgctcaccgccacgggctatgtgcgccggcgccgc
aaggccgccagccgcacggtggatcccaacaagatgcgccccggcgatttcgtggtgcac
cgcaaccacggcatcggcaagttcatcaagctcgaaaagctggcgatcagcggcgaatcg
cgcgactacctggtggtgcaatacgccgacggcctactgcgggtggcggccgatcaactc
ggcagcctcggccgctaccgggccaccaccgagcaaccgcccgatctcaaccggatgggc
ggcacggcctggagcaaggccaaggagcgggcccgcaaggccgtgcgcaaggtggcgctc
gatctggtcaagctctacgccgaacgccaccaggccgccggtttttgcttccccgccgat
ggtccctggcaaagcgaactggaggagtcgttcccctacgaacccacccccgaccagctg
aaggcgatcgccgatgtgaagcgcgacatggaaaagccccagccgatggaccggctggtg
tgcggcgatgtgggcttcggcaaaaccgaagtggcgatccgcgccatcttcaaagccgtc
accgccggcaagcaggtggcgatgctcgcccccaccacggtgctggcacagcagcactgg
cgttctctctcggagcgctttgcgccctatccgatcaaggtgagcttgctcaaccgcttc
cgcaccgccggcgaacgcaaggcgatccaggagggcctgggggaaggcacggtggatgtg
gtggtgggcacccaccaactgctgggcaagggcaccgccttcaagcagctcgggctgctg
gtggtggatgaggagcagcgcttcggcgtgaaccagaaggaaaagatcaaggcgctgcgc
aaagacgtcgacgtgttgaccctctcggcaaccccgatcccgcgcaccctctacatgagc
ctctccggcgtgcgggagatgagcctgatcaccacgccgccgcccctgcgccgcccgatc
aaaacccacctcgccgccctggatgaggaggcggtgcgcagcgccatccgccaggagctc
gatcgcggcggccagatcttctacgtggtgccgcgggtggaaggcatcgaagacgtggct
gaggggttgcggttgatggtcccgggcctacgcctcctggtggcccacggtcagatggcc
gaaggcgaactggagagcgccatggtggcgttcaacgccggcgaagccgacctgatgctc
tgcaccacgatcgtggagagcggcctcgacatcccgcgcgtcaacacgatcctgatcgaa
gacgcccacaagttcggcctggcccagctgtatcagctgcggggccgggtgggccgcagc
ggcatccaggcccatgcctggttgttctatccaggtgatgcatcactgagcgaagcagcg
cggcagcggctgcgggccatccaggaattcgcccaactcggcagcggctatcaactcgcc
atgcgcgacatggagattcgcggcgtgggcaacctgctgggggtggagcagagcggccag
atggaaaccatcggcttcgacctctacatggagatgctgcaggaatccctggcggagatc
caggggcaagacatccccgccgtcgacgacacccagatcgatctgccgatcaccgccttc
atccccggcgactggatcgccgacaacgacgagaagatggccgcctaccgcgccgcggcc
gactgcggaagccccgattctctgctgcaactggccaccgactgggtggatcgctatggc
gccatcccggcaccggtgatctcactgctgcagctgatggagctgaagctgctggccaag
cgctgcggcttctcacgcatcaaacccgagaagcccaacatcgccctggaaacaccgatg
gaggagcccgccttccggctgttgcgccaggggctgccccagcacctgcacggccggttg
atgttccaggccggttccggcaccacctccaaagtgctggcccgggggctgggggtgctg
ccaatggagaagcaagtggaggagctgatgaactggctcaagcaaatggccgaacagatt
cccggcgccgacgggctcaccgatgcccaacgggccgagcagatccaggccaagaacgaa
gcggtgctgagcgtctga
DBGET
integrated database retrieval system
