Synechococcus sp. CB0101: CB0101_01645
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Entry
CB0101_01645 CDS
T06409
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sync
Synechococcus sp. CB0101
Pathway
sync03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sync00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CB0101_01645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sync03019
]
CB0101_01645
Enzymes [BR:
sync01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CB0101_01645
Messenger RNA biogenesis [BR:
sync03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CB0101_01645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
EB1
Motif
Other DBs
NCBI-ProteinID:
QCH13808
LinkDB
All DBs
Position
297391..298692
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AA seq
433 aa
AA seq
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MPAPSEEELNSSPFAALGLGRPIVQAVLEKGYTNPSPIQTQCIPAVLEGRDVMAAAQTGT
GKTAGFTLPMLERLRHGPHARNNVVRALVLTPTRELAAQVGENVAAYSRHLDLRSDVVFG
GVKINPQMMRLRGGADVLVATPGRLMDLAQQNAVKLNRVEILVLDEADRMLDMGFIRDIQ
KILALLPAKRQNLLFSATFEASIKKLATGLLHNPVQLQATPENRTATTVEHLLHPCDMAR
KPDLLCHLIKSNDWQQVLVFSRTKHGANRIADRLTQEGMAAAAIHGNKSQGARTRALAGF
KSGELRVLVATDIAARGIDIHQLPHVVNLDLPNQAEDYVHRIGRTGRAGCNGHAVSLVAA
EEHELLRAIERLIGNPLPKQEVPGFERTIHSAPPLDLSGGRGRGGSSRGGGNSRAGGART
GRGRAPAGRSGQR
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
attccggcgccctccgaggaggagctgaacagctcgcccttcgccgctcttggcctaggc
cggccgatcgtgcaggcggtgttggagaagggctatacaaacccctcgccgattcagacc
cagtgcatcccggcggtgctcgagggccgcgatgtgatggcggccgcccagaccggtacg
ggcaaaacagcaggcttcaccctgccgatgttggagcggttgcgccacggcccccacgcc
cgcaacaacgtggtgcgggccctggtgctgacccccacccgcgagctggcggcccaggtg
ggcgaaaacgtggcggcctattcacgccacctcgatctgcgctcggatgtggtgtttggc
ggggtgaagatcaatccccagatgatgcgcttacgtggcggcgccgatgtgctggtggcc
acccccggccggttgatggatctggctcagcagaacgccgtgaagctcaaccgggtggaa
atcctggtgctggatgaagccgatcggatgctcgatatgggcttcatccgcgacatccag
aaaatcctggcgctgttgccggccaagcggcagaacctgctgttctccgccacgttcgaa
gcatcgatcaaaaagctggccaccggtttgctgcataacccggtgcagctccaggccaca
ccggagaaccgcaccgccaccacggtggagcatctgcttcatccctgtgacatggcgcgc
aagccggatctgctctgtcacctgatcaagagcaacgattggcagcaggtgctggtgttc
tcccgcaccaaacacggtgcgaatcgcattgccgatcgcctcacgcaagagggcatggcg
gccgcggcgatccatggcaacaagagccagggggcccgcacccgtgccttggccggcttc
aagagcggtgagctgcgggtgctggtggccaccgatatcgccgctcgcggcatcgacatt
caccagctcccccacgtggtgaatctggatctacccaaccaggcggaggactatgtgcac
cgcattggccgcaccggccgtgccggttgcaatggccatgcggtgtcgctggtggcggcg
gaagagcatgagttgttgcgcgcgatcgagcgtttgatcggcaacccactgcccaagcag
gaggtaccgggcttcgagcgcaccatccactcagcgccccccctggatctcagcggtggc
cgtggccgcggcggcagcagccgtggcggtggcaacagccgcgcgggtggcgcccggacc
gggcgcggacgcgctcctgcggggcgatcgggccagcgttga
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