Synechococcus sp. CB0101: CB0101_03520
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Entry
CB0101_03520 CDS
T06409
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
sync
Synechococcus sp. CB0101
Pathway
sync03030
DNA replication
sync03430
Mismatch repair
sync03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sync00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CB0101_03520
03430 Mismatch repair
CB0101_03520
03440 Homologous recombination
CB0101_03520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sync03032
]
CB0101_03520
03400 DNA repair and recombination proteins [BR:
sync03400
]
CB0101_03520
Enzymes [BR:
sync01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CB0101_03520
DNA replication proteins [BR:
sync03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CB0101_03520
DNA repair and recombination proteins [BR:
sync03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CB0101_03520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
QCH14114
UniProt:
A0A4V1DHL9
LinkDB
All DBs
Position
complement(638718..642254)
Genome browser
AA seq
1178 aa
AA seq
DB search
MAFVPLHNHSDYSLLDGASQLPAMVKRAEELGMPALALTDHGVMYGAIELLKLCKGTAVK
PIIGNEMYVINGSIDDPNPPKKERRYHLVVLAKNAVGYRNLVKLTSISHLRGMRGRGIFS
RACIDKPTLEQYSEGLIVATACLGGELSQAILRGRPDVARDVARWYQGVFGDDFYLEIQD
HGSPEDRIVNVELVRISQELGIPLIATNDAHYLTSNDAEAHDALLCILTGKLVTDEKRLR
YTGTEYIKGEQEMLALFADHLEPEVVAEAVANTARVAEKVEDYDILGRYQMPRFPIPEGH
TPVSYLREVSEQGLRARLQLPENEVFTPEYGERLTFELQVMEQMGFPTYFLVVWDYIRFA
RENGIPVGPGRGSAAGSLVAYALGITNIDPVTNGLLFERFLNPERKSMPDIDTDFCIERR
GEVIDYVTRRYGEEKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKLIPVVRGKPA
KLKEMIGDESPAPEFREKYQNDPQVKRWVDMAMRIEGTNKTFGVHAAGVVIAADPLDEVV
PLQRNNDGQVITQYFMEDVESMGLLKMDFLGLKNLTMIDKTIDLVEQSTGQKVDPDALPL
DDPGTYGLLARGDLEGIFQLESSGMRQIVRDLKPSSLEDISSILALYRPGPLDAGLIPKF
INRKHGREAIDFAHAKLEPILQETYGIMVYQEQIMRIAQDLAGYSLGEADLLRRAMGKKK
KSEMEKHQSIFVKGATERGVDSKIAEALFEQMVLFAEYCFNKSHSTAYGAVTYQTAYLKA
HYPVAYMAALLTVNAGTTDKVQRYISNCNAMGIEVMPPDVNASGIDFTPVGDRILFGLSA
VRNLGDGAIRALLEARSADGPFRSLADLCDRIPGTTLNRRSLESLIHCGALDALEPQANR
AQLMADLDLIVDWASSRARDRASGQGNLFDLMGGGSADAVADAAGSGDLSTAPKAAPVPD
YPPTEKLRLEKDLVGFYLSDHPLKQLTRPVQLLSPVGLGSLEEQADKTRVSVVGMVAGLR
PVTTRKGDRMAVLQLEDLSGSCEAVVFPKTYARLADFLMVDARLLIWASVDRRDEQVQLI
VDDCRVIDELKVLLVELEGSEASDIAVQHKLRECLNQHRTEKDEAGVRVPVVAMVHHHGQ
TRFVRLGHQFCVRDSEAALSSLTAQAFRARLSSPLVAA
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
gtggctttcgttccgctccataaccacagcgactacagccttctggatggggccagtcag
ctgccggcgatggtgaaacgggctgaggagctgggcatgccggccctggccctcaccgac
cacggcgtgatgtacggcgccattgagctgctcaagctctgcaagggcaccgccgtgaag
ccgatcatcggtaatgagatgtatgtcatcaatggctcgattgatgaccccaatcccccc
aaaaaagagcgccgctaccacctggtggtgctggccaagaacgcggtgggctatcgcaac
ctggtgaagctcaccagcatcagccacctgcgtggcatgcgcggccgtggcatcttttcg
cgcgcctgtatcgataaacccaccctcgagcaatacagcgaggggctgatcgtggccacc
gcctgccttggtggtgagctctcccaggcgatcctgcgcggtcgacccgatgtggcccgc
gatgtggcccgctggtatcagggcgtgtttggcgacgacttttacttggagatccaggac
cacggttcaccggaagatcggatcgtgaacgtggaactggtgcgtatttctcaggagctg
ggcattccgctgatcgccaccaacgacgctcactacctcaccagcaacgacgctgaagcc
cacgacgcgctgctctgcatcctcaccggcaagctcgtcaccgacgagaagcgcctgcgt
tacaccggcaccgaatacatcaaaggtgagcaggagatgctggccctgttcgccgatcac
ctcgagccggaggtggtcgccgaagcggtcgccaacaccgcccgtgtggccgaaaaggtg
gaggactacgacatcctcggccgctatcagatgccccgcttcccgatcccggaggggcac
acgccggtgagctatctgcgcgaggtgagcgagcagggtttgcgggcccggcttcagttg
ccggagaacgaagtgttcacgccggagtacggcgagcggctcaccttcgagctgcaggtg
atggagcagatgggcttccccacctacttcctggtggtgtgggattacatccgcttcgcc
cgcgagaacggcatccctgtcgggcccggccgcggttcggccgccggttccttggtggcc
tacgccctggggattaccaacatcgatccggtcaccaacgggcttttgttcgagcgcttc
ctcaatcctgagcgcaagtcgatgcctgatatcgacaccgacttctgcatcgagcgccgt
ggcgaggtgatcgactacgtgacccgccgctatggcgaggagaaggtggcccagatcatc
accttcaaccgcatgacctccaaggccgtgctgaaggatgtggcccgcgtgctcgacatc
ccctacggcgatgccgatcgtttggcgaagttgatcccggtggtgcgcggtaagcccgcc
aagcttaaggagatgattggcgatgaatcaccggcgcccgaattccgcgagaaatatcag
aacgatccccaggtgaaacgctgggtggatatggcgatgcggatcgaaggcaccaacaaa
accttcggtgtgcatgcggctggtgtagtgatcgccgctgatccgctcgatgaggtggtg
ccgctgcagcgcaacaacgacggccaggtgatcacccaatacttcatggaagacgtggag
tcgatggggctcctgaagatggacttcctcggcctcaaaaacctcacgatgatcgataaa
accatcgatctggtggagcagagcactggccagaaggtggatcctgatgcgcttcctctc
gatgatcccggcacctacggcctgctggcccgcggcgatcttgaaggcatcttccagctg
gaatcgagcggcatgcgccagatcgtgcgcgatctcaagccctcatccctggaggacatc
tcgtcgatcctggcgctctaccggccgggtccgctcgatgccggcctgattcccaagttc
atcaaccgcaagcatggccgcgaggcgattgatttcgcccacgccaagctcgagccgatc
ctgcaggagacctacgggatcatggtgtatcaggagcagatcatgcggattgcgcaggat
ctagccggctattcactcggtgaagccgacctgctgcggcgtgcgatgggtaagaagaag
aagagtgagatggagaagcaccaaagcatctttgtgaagggggccaccgagcgcggtgtc
gactcgaagatcgccgaggcgctgtttgagcagatggtgctgttcgccgaatactgcttc
aacaagagccattccaccgcctacggcgcggtgacctatcaaacggcgtatctgaaggct
cactatccagtggcctacatggcggcgctgctgacggtgaatgccggcaccaccgacaag
gtgcagcgctacatctccaactgcaatgccatgggcattgaagtgatgccgccggatgtg
aacgcctccgggatcgacttcacccccgtgggcgaccgcatcctgtttggcctttccgcc
gtgcgcaatttgggtgatggcgcgattcgcgccctgttggaggcccgtagcgctgatggc
ccgttccgctccctggccgatctctgcgaccgcatccccggcaccacgctcaaccggcgc
tcacttgaatcgctgatccattgcggtgcgctcgatgctctcgagccccaggccaaccgt
gcccagctgatggctgatctcgatttgatcgtggattgggcctcctcccgtgcccgcgac
cgcgccagcggccagggcaatctgtttgatctgatgggtggcggcagtgctgatgctgtt
gccgatgcagctggcagcggagatctgagcacggcccccaaggcagcgccggtgcccgac
tacccgcccaccgaaaagctccgtctggagaaagacctggtgggcttctacctctccgat
cacccgctcaagcagctcacccgcccggtgcagctgctctcacccgtggggctgggcagc
ctggaggagcaggccgataagacccgcgtcagcgtggtgggcatggtggcgggcctgcgg
cctgtcaccacgcgcaaaggtgatcgcatggcggtgctgcagctcgaagacctcagcggc
agctgcgaggccgtggtgtttccgaagacctacgcccgcctggcggatttcctgatggtg
gatgcgcgcttgttgatctgggcctcggtggaccggcgcgatgagcaggtgcagttgatc
gtggatgactgccgcgtgatcgatgagctcaaggtgttgctggtggagctcgaaggcagt
gaggccagtgatatcgctgtgcagcacaaattgcgcgagtgcctcaatcagcaccgcacc
gagaaggatgaggccggcgttcgcgttcccgtggtggcgatggtgcaccaccacggccag
acccgtttcgtgcgcctcggccatcagttctgcgtgcgtgacagtgaggccgccctcagc
agcctcaccgcccaggcgtttcgggctcgcctcagctcgccgctggtggccgcttga
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