Synechococcus sp. CB0101: CB0101_11185
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Entry
CB0101_11185 CDS
T06409
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sync
Synechococcus sp. CB0101
Pathway
sync03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sync00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CB0101_11185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sync03019
]
CB0101_11185
03400 DNA repair and recombination proteins [BR:
sync03400
]
CB0101_11185
Enzymes [BR:
sync01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CB0101_11185
Messenger RNA biogenesis [BR:
sync03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CB0101_11185
DNA repair and recombination proteins [BR:
sync03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CB0101_11185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
DUF2635
Motif
Other DBs
NCBI-ProteinID:
QCH16303
UniProt:
A0A4P7ZXS8
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All DBs
Position
2091240..2092700
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AA seq
486 aa
AA seq
DB search
MQEHFGWASFRPGQRPVVEAMLEGRDCLAVLPTGAGKSLCYQLPALVRGGLVLVISPLVA
LMEDQVQHLQRRGIPAACLHRGLDPARRRDLIARVRSNRLRLIYLAPERLQVEATRQLLE
DIHEQGQLVGVAIDEAHCISAWGHDFRPDYRRLGQLRRLCPGVPLVALSATAAPRVRADL
IRMLELRRPLIQVRSARRDNLAYAMRRRPADPMPQVLEALAEARGAKLIYARTRRSVESW
ARRLCDAGVEAIAYHAGMDPESRALALTHFQEHAAPVLVATVAFGMGVDRPDVGLVLHLD
LPASPEGYLQESGRAGRDGLPACCLVLFDPEDRTSLGWAIRASAESVSDPQERQRVELAQ
QQLRRMEAVAEGPACREQALLLAVGELVPPCGRCDRCTERPALSDWSEQTAEVLALLEQR
GGVDLRSLGDDLAQAEGEEVERWRWLARRLVQEDLIAESDDGSQRLWLRPAGRRFLRQPW
PFRLAA
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
ctgcaggagcatttcggttgggcaagcttccgccccggccagcggccggtggtggaggcg
atgctcgaagggcgcgactgcctggcggtgctgcccacgggcgctggcaaatcgctctgt
tatcagctgcctgcgctggtgcgtggcggcttggtgctggtgatttcgccgctggtggcc
ttgatggaagatcaggtgcagcacctgcagcgccgcggcattccggcggcctgtttgcat
agggggctcgatccggcccgccgccgcgatctgatcgcccgggtgcgcagcaaccggctg
cggctgatctatctggcacccgagcgcctgcaggtggaggccacccgccaactgctggaa
gatatccacgagcaggggcagttggtgggcgtggccatcgatgaagcccactgcatcagc
gcctggggccacgatttccgccccgactaccgccgcctaggccagctgcgtcggctctgc
ccaggcgtgccgctggtggccctcagtgccacggcggcacctcgggtacgggctgatttg
attcgcatgttggagctgcggcgcccgctcatccaggtgcgctctgcccgtcgcgacaat
ctggcctatgcgatgcggcggcggccggctgatccgatgccgcaggtgctggaggccctg
gcggaagcccgaggcgccaagctgatctacgcacgcacccgccgttcggtggaaagctgg
gcgcggcggctctgcgatgccggcgttgaggcgatcgcgtatcacgccgggatggatccg
gagagccgggcccttgccctcacccacttccaggagcatgcggcgccggtgttggtggcc
acggtggccttcgggatgggcgtcgatcggccggatgtgggcctggtgttgcacctcgat
ttgccggcgagccctgaggggtatctccaggaatccggtcgggctggccgcgatggcctg
ccggcgtgctgtctggtgctcttcgatccagaggaccgcaccagcctgggctgggccatc
cgcgcatcagcggaatcggtgagtgatccccaggagcgtcagcgggtggagctggcccag
cagcagctgcgccgcatggaagcggtggcggaaggcccggcttgccgggagcaggcgttg
ctgctggcagtgggtgagctggtgccgccctgcggccgctgtgatcgctgcacggagcgc
cccgccttgagcgactggtcggagcagaccgctgaggtgctggccctgctggagcagcgg
ggcggtgtggatctgcgcagcctgggcgacgatctcgctcaggccgaaggcgaggaggtg
gagcgctggcgttggttggcgcgccgtctggtgcaggaagacctgatcgccgagagcgat
gacggcagccagcgcctctggctgcgcccggctggtcgccgcttcttgcggcagccctgg
cccttcaggctggcggcctga
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