Synechococcus sp. CB0101: CB0101_12535
Help
Entry
CB0101_12535 CDS
T06409
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sync
Synechococcus sp. CB0101
Pathway
sync03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sync00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CB0101_12535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sync03019
]
CB0101_12535
03009 Ribosome biogenesis [BR:
sync03009
]
CB0101_12535
Enzymes [BR:
sync01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CB0101_12535
Messenger RNA biogenesis [BR:
sync03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CB0101_12535
Ribosome biogenesis [BR:
sync03009
]
Prokaryotic type
rRNA helicases
CB0101_12535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
DEDD_Tnp_IS110
Cas3-like_C_2
Peripla_BP_1
HEM4
Peripla_BP_4
B12-binding
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
QCH16328
UniProt:
A0A4P7ZZM8
LinkDB
All DBs
Position
2313416..2315278
Genome browser
AA seq
620 aa
AA seq
DB search
MIQDQQPETQAISTETTSAVASTAAQVAVDLSALDCASSTSADDSAEVSTTVIAATPSGF
ASFGFAPELLDALTAIGYEEPSPIQKAAIPELLLGRDLVGQAQTGTGKTAAFALPMLAAL
DGQQRTPQVLVLTPTRELAIQVADAFKSYAANMPHLRVLPLYGGSDFRDQIVRLKRGVQI
VVGTPGRVMDHMRQGTLDLSGLRSLVLDEADEMLRMGFIDDVEWVLEQLPSQRQVVLFSA
TMPPEIRRISHKYLNDPAEVTIKTKGADSSRIRQRFITVNGPQKLEALTRVLESETKEGV
IIFARTKAITVTVAEALEAKGYDVAVLNGDVAQSQRERTIERLKNGTVDVLVATDVAARG
LDVDRITLVVNYDIPFDSEAYVHRVGRTGRAGRSGDAILFVTPRERRFLGGLERAVGRPI
EPMQIPSNATINQSRLDRLRQRLSDGLTTEGRDEERALLSEIVQRVAQESGATPEQLALA
ALQLVVGPQPLLVQGDESWIRQAAGRDGGRDGSRDGRRDGRREERPGASRRGPREQSGPP
ESGMERFRIEVGWRDRVKPGNIVGAIANEAGLNGRSIGRIQIFDAHSLVDLPQGMPEDVF
QGLRRLKVMNRELQISRSRD
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atcatccaagaccaacaacccgagactcaagccatttccactgaaacaaccagcgccgta
gcgagcaccgcggcccaggtggccgttgatctgagcgccctcgattgcgccagcagcacc
agcgccgatgacagcgccgaggtgagcaccaccgtgatcgccgccacgccctcaggcttc
gccagcttcggcttcgcgcctgagttgctcgatgccctcaccgccatcggctacgaggag
ccctccccgatccagaaggccgcgatccctgagctgttgctcggccgagacctggtgggc
caggcccaaaccggcaccggcaaaaccgcagcgttcgccctgccgatgctcgcggccctg
gatggccagcagcgcaccccccaggtgctggtgctcacccccacccgtgagctggccatc
caggtggccgatgccttcaagagctatgcggcgaacatgccgcacctgcgcgtgctgccc
ctctatggcggctccgatttccgcgatcagatcgttcgcctcaagcgcggcgtgcagatc
gtggtgggcacccccggccgggtgatggaccacatgcgccagggcaccctcgacctcagc
ggcctgcgcagcctggtgctcgacgaagccgacgagatgctgcgcatgggcttcatcgac
gacgtggagtgggtgctcgagcagctccccagccagcgccaggtggtgctcttctccgcc
acgatgccgcccgaaattcggcgcatttcgcacaaatacctcaacgatcctgctgaggtc
acgatcaaaacgaagggcgccgattccagccggattcgccagcgcttcatcaccgtcaac
ggtccccagaagctcgaagccctcacccgggtgctcgagtcggaaaccaaagaaggggtg
atcatctttgcccgcaccaaggcgatcaccgtcaccgtggccgaagccctcgaagccaag
ggctacgacgtggccgtgctcaacggtgatgtggctcaaagccagcgggagcgcacgatc
gagcgcctcaagaacggcacggtggatgtgctggtggccaccgatgtggcggcccgcggc
ctcgatgtggaccgcatcaccctggtggtgaactacgacatccccttcgattccgaggcc
tacgtgcaccgggtcggccgcaccggccgcgccggtcgcagcggcgacgcgattctgttt
gtcaccccaagggagcggcgtttcctgggcgggttggagcgggcagtgggccggccgatc
gagccgatgcagatccccagcaacgccaccatcaaccagagccgcctggatcgtctgcgc
cagcgcctcagcgacggcctcaccaccgaaggccgtgatgaagagcgcgccctgctctcc
gagatcgtgcagcgagtcgcccaagagagtggcgccacgcctgagcagctggccctggcc
gctctgcagctggtggtgggtccccagccgctgctggtgcaaggcgatgagagctggatc
cgccaggccgctggccgcgatggcgggcgcgacggcagccgtgatgggcgccgcgacggg
cgccgcgaggaacgccccggtgccagccgccgcggcccccgcgagcaatccggtccgccg
gagtccggcatggagcgcttccgcatcgaggtgggctggcgcgatcgcgtcaagcccgga
aacatcgtgggcgccatcgccaatgaagccggcctcaacggccgcagcatcggccgcatc
cagatcttcgatgcccacagcctcgtggatctgccccagggcatgcccgaagacgtgttc
cagggcctgcggcgcctgaaggtgatgaaccgcgaactgcagatcagccgttcccgcgac
tga
DBGET
integrated database retrieval system
