Synechococcus sp. CB0101: CB0101_13960
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Entry
CB0101_13960 CDS
T06409
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
sync
Synechococcus sp. CB0101
Pathway
sync03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sync00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CB0101_13960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sync03019
]
CB0101_13960
03016 Transfer RNA biogenesis [BR:
sync03016
]
CB0101_13960
Enzymes [BR:
sync01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
CB0101_13960
Messenger RNA biogenesis [BR:
sync03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CB0101_13960
Transfer RNA biogenesis [BR:
sync03016
]
Prokaryotic type
tRNA degradation factors
CB0101_13960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
PCB_OB
S1_RRP5
KH-I_KHDC4-BBP
OB_RRP5_4th
KH_KhpA-B
KH_PNO1_2nd
DUF3586
Motif
Other DBs
NCBI-ProteinID:
QCH15860
LinkDB
All DBs
Position
2575091..2577238
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AA seq
715 aa
AA seq
DB search
MQGHTQSISFDGREIRLTTGRFAPQAGGSVMVECGDTAVLVTATRSGGREGIDFLPLICD
YEERLYAAGRIPGSFMRRESRPPERATLIARLIDRPMRPLFPSWLRDDLQIVATCMSLDE
RVPPDVLAVTGASLATLLAKIPFHGPMAAVRVGLLGDDFVLNPSYREIERSDLDLVVAGT
PEGVIMVEAGANQLPEQDVIEAIDFGYEAVCELIKAQQALLKELGIEQVIPEPQTTDDTL
PKFLEKECAKGIGDVLKQFKLTKAERDEQLDAIKGQVAEKIDGLKDDDAIKVAVSSNGKA
LGNSYKSLTKKLMRDQIVKDGKRVDGRNLDEVRPISAAAGVLPKRVHGSGLFQRGLTQVL
SCATLGTPSDAQEMDDLNPSNEKTYLHHYNFPPYSTGETKPMRSPGRREIGHGALAERAL
IPVLPSKESFPYVLRVVSECLSSNGSTSMGSVCGSTLALMDARVPLKAPVSGAAMGLIKE
GKEVRILTDIQGIEDFLGDMDFKVAGTEKGITALQMDMKITGLEVKTVAEAINQARPARL
HILEKMLEAIEKPREVLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKIDIED
GGIVTIASHDGAAAEEAQRIIEGLTRRVSEGEVFSGAVTRVIPIGAFVEILPGKEGMIHI
SQLSEARVEKVEDVVRVGDQVTVRVREIDNRGRINLTLRGVPQSEEPAAAVVVAE
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
gtgcaaggtcacactcagtcgatctccttcgatggtcgggagatccggctgaccaccggc
cgctttgcccctcaggcaggcggttcagtgatggtcgaatgcggagatactgccgttctg
gtcaccgccacccgctccggcggtcgtgagggcatcgatttcctgcccctgatctgcgat
tacgaagagcgcctctacgccgcaggtcgcattcccggcagcttcatgcgccgcgaaagc
cgtccgcccgagcgcgccaccctgattgcccgcctgatcgaccgcccgatgcggccgctc
ttccccagctggctgcgcgacgacctgcagatcgtcgccacctgcatgtcgctcgatgag
cgcgtgccgcctgatgtgctcgccgtgaccggcgcctcgctggccaccctgctggccaag
atccccttccacggcccgatggccgctgtgcgcgtgggtctgctgggcgatgacttcgtg
ctcaaccccagctaccgcgagatcgagcgctctgacctcgatctcgtcgtggccggcacg
cccgaaggcgtgatcatggtggaagccggtgcgaaccagctgcccgaacaagacgtgatc
gaagcgatcgacttcggttacgaagccgtgtgcgaactgatcaaggcccaacaggccctg
ctcaaggagctcggcatcgagcaggtgatccccgagccccaaaccaccgacgacaccctg
cccaagttcctcgagaaggaatgcgccaagggcatcggcgatgtgctgaagcagttcaag
ctcaccaaggctgagcgtgacgagcagctcgatgcgatcaaaggccaggtggccgagaag
atcgacggcctcaaagacgacgacgccatcaaggtggcggtgagcagcaacggcaaggcg
ctgggcaacagctacaagtcgctcaccaaaaagctgatgcgcgaccagatcgtcaaagac
ggcaagcgcgtggatggccgcaaccttgatgaagtgcgcccgatcagtgccgccgccggc
gtgctgcccaagcgcgtccacggctctggcctgttccagcgtggtctgacccaggtgctc
tcctgcgccaccctcggcaccccgagcgatgcccaggagatggacgacctcaacccgtcc
aacgagaagacctacctgcaccactacaacttcccgccctactccaccggcgagaccaag
ccgatgcgcagccccggtcgccgtgagatcggccacggcgccctggcggagcgggctctg
atcccggtactgcccagcaaggaatccttcccctacgtgctgcgcgtggtgtcggagtgc
ctgagctccaacggctccacctccatgggttcggtgtgcggcagcaccctggccctcatg
gatgcccgcgtgcctctgaaggcccccgtgagcggagccgccatgggcttgatcaaggaa
ggcaaagaggtgcggatcctcaccgacatccagggcatcgaggacttcctcggcgacatg
gacttcaaggtggccggcaccgagaagggcatcaccgcccttcagatggacatgaagatc
accggtcttgaggtgaagaccgtggccgaggcgatcaaccaggcccgcccggcccgcctg
cacatcctcgagaagatgctcgaggcgatcgagaagccccgtgaggtgctgagcccccac
gctccgcgcctgctcagcttccgcatcgatcccgaactgatcggcaccgtgatcggcccc
ggcggccgcacgatcaagggcatcaccgagcgcaccaacaccaagatcgacatcgaagat
ggcggcatcgtcacgatcgccagccacgacggtgctgccgctgaggaagcgcagcgcatc
atcgaaggcctcacccgccgcgtgtcggaaggcgaagtgttcagcggtgctgtcacccgc
gtgatcccgatcggcgccttcgtggaaatcctgcccggcaaggaagggatgatccacatc
tcccagctcagcgaggcccgcgtggagaaggtggaagacgtggtgcgcgtgggcgatcag
gtgaccgtgcgcgtgcgcgagatcgacaaccgcggccgcatcaacctcaccctgcgcggc
gtgccccagtcggaagagccggcagcagcagtggttgtggccgagtga
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