Synechococcus sp. KORDI-52: KR52_00870
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Entry
KR52_00870 CDS
T03346
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
synd
Synechococcus sp. KORDI-52
Pathway
synd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
synd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KR52_00870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
synd03019
]
KR52_00870
03009 Ribosome biogenesis [BR:
synd03009
]
KR52_00870
Enzymes [BR:
synd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
KR52_00870
Messenger RNA biogenesis [BR:
synd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KR52_00870
Ribosome biogenesis [BR:
synd03009
]
Prokaryotic type
rRNA processing factors
KR52_00870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
AII47722
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All DBs
Position
complement(142862..144802)
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AA seq
646 aa
AA seq
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MPQQIVIAEQLRIAAVLTDERVDELIVAQGRYQIGDVYLGTVENVLPGIDAAFVNIGESE
KNGFIHVTDLGPLRLKKGSAGITELLEPRQKVLVQVMKEPTGTKGPRLTGNLALPGRYLV
LQPHGQGVNISRRIGPDAERNRLRALGVLIKPPGAGLLIRTEADGISEDLLIEDLESLLR
QWEAIQQAAETASPPVLLNRDEDFIHRILRDHMGPDLARVVVDDAAAVDRVSSFLGADAS
TVLVEAHGESSELLEHYKVNAAIRDALKPRVDLPSGGYVIIEPTEALTVIDVNSGSFTRS
ANARETVLWTNCEAAIEIARQLKLRNIGGVIIIDFIDMDSRRDQLQLLEHFTTAVRDDSA
RPQIAQLSELGLVELTRKRQGQNIYELFGRACPSCGGLGHVAVLPGKDLLQPLATATGLV
RSAASARAEVVPSGENGGNGRRRRGGRGRGSQDAVPPVETSEPTSPEVSTQDAQEPAVAR
RQDPELVAVPMTDEQQQLFGWFGLNPALLLEKPPESDNVVVRVVRPGEDEQEILEAARQQ
LAASSGRRRRRGGRGGRSGSRNGSSQPTATPTAETPVVVTSPASDESTPLMVEITPLEAV
TNVTISEPEPAPISEPAEPEPVATAETAEPEEPRRRRRRSSAVATV
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgccccagcaaattgtcatcgcggagcagctgcgcatcgcagcggtgctgaccgatgaa
cgtgttgatgaactgatcgtcgcgcagggtcgttatcagattggagatgtctacttagga
acggtcgaaaatgttttgcctggcattgatgccgccttcgtcaatatcggtgaaagtgag
aagaacggattcatccatgtcactgatctcggccccctgcgtctgaagaaaggttctgca
ggaattactgaacttcttgagccgcgtcagaaggttctggtgcaggtgatgaaggagccg
acaggcaccaagggcccacgcttgacggggaacctggccctgccggggcgctacctggtg
ttgcagccccatggacagggtgtgaacatttctcgtcgcatcggtcccgatgcggaaagg
aaccgactgcgcgctctgggtgtcctgatcaagcctcccggggccggactgttgattcgt
acggaagccgatggcatcagcgaagacctgctgattgaagatctggaatccttgctgcgc
cagtgggaggccattcagcaagccgccgagacggcttcccccccggttctgctcaatcgc
gatgaagacttcatccatcggattctgcgggaccacatgggtccggatctggcccgggtg
gtggtggatgatgccgccgctgtggatcgtgtgagcagcttccttggcgctgatgccagc
actgtgctggtggaagctcacggtgaatccagcgagttgctggagcactacaaggtcaat
gccgccatccgcgatgcgctgaagcctcgggtagacctgccatccggtggctacgtgatt
atcgagcccaccgaagcactcacggtgattgacgtgaactccggctcgttcacgcgctcg
gccaatgcgcgcgaaaccgtcctctggaccaactgtgaggcggcgattgagatcgcccgt
cagctcaagctgcgcaacatcggcggggtgatcatcatcgatttcatcgatatggattcc
cgtcgtgatcagcttcagctgctggagcacttcacgacagccgtccgtgacgattccgct
cggccgcagatcgcacagctcagtgaattgggcctggtggagctcacccgcaagcgccaa
gggcagaacatctatgaactcttcggaagggcttgccccagctgtggaggcctgggccat
gtggccgttcttcccggcaaagatctgctccagcccctggcgaccgccacgggattggtg
cgttcagcggcctctgcccgcgctgaagtggttccgtctggagagaacggtggcaatggc
cggcgacgacgcggaggccgcggccgcggcagtcaggatgccgttcctccggtcgagacg
tccgaacccacgtcccctgaggtgtcgacccaggatgctcaggagcccgcggtcgcccgc
cgtcaggaccctgaattggttgctgtgccgatgaccgatgagcagcagcagttgtttggt
tggtttgggttgaatcctgccctgctgttggagaagcctcctgaatccgacaatgtggtt
gtcagggttgttcgtcctggtgaggacgagcaagagatcttggaagctgcgcgtcagcaa
ctggcggccagttccggacggcgccgtcgtcgcggcggacggggcggtcgttcagggtca
cgcaatggctcaagtcagcccaccgcgacaccaaccgccgaaacgcccgttgtcgttacc
tcacccgcttcggatgagtcgactcctttgatggtggagatcacccccctggaagcggtg
accaacgtgacgatcagcgaaccagaaccagcccccatcagtgaaccggctgagcccgag
cctgtggctacggcggaaacagctgagcccgaggagcctcgccgtcgccgtcgccgctcc
tcggctgtcgccacggtctga
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