Synechococcus sp. KORDI-52: KR52_05900
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Entry
KR52_05900 CDS
T03346
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
synd
Synechococcus sp. KORDI-52
Pathway
synd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
synd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KR52_05900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
synd03021
]
KR52_05900
03400 DNA repair and recombination proteins [BR:
synd03400
]
KR52_05900
Enzymes [BR:
synd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KR52_05900
Transcription machinery [BR:
synd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KR52_05900
DNA repair and recombination proteins [BR:
synd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KR52_05900
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
AII48674
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All DBs
Position
1112709..1116002
Genome browser
AA seq
1097 aa
AA seq
DB search
MSSSAIQVAKTATYLPDLVEVQRASFKWFLDQGLIEELESFSPITDYTGKLELHFIGSEY
RLKRPRHDVEEAKRRDATFASQMYVTCRLVNKETGEIKEQEVFIGELPLMTERGTFIING
AERVIVNQIVRSPGVYFKDEMDKNGRRTYNASVIPNRGAWLKFETDKNDLLHVRVDKTRK
INAHVLMRAMGLSDNDVLDKLRHPEFYKKSIDAANDEGISSEDQALLELYKKLRPGEPPS
VSGGQQLLQTRFFDPKRYDLGRVGRYKINKKLRLTIPDTVRTLTHEDVLSTLDYLINLEL
DVGGASLDDIDHLGNRRVRSVGELLQNQVRVGLNRLERIIKERMTVGETDSLTPAQLVNP
KPLVAAIKEFFGSSQLSQFMDQTNPLAELTHKRRISALGPGGLTRERAGFAVRDIHPSHY
GRLCPIETPEGPNAGLINSLATHARVNEYGFIETPFWKVENGVVLKDGDPIYLSADREDE
VRVAPGDVATEDDGRISADLIPVRYRQDFEKVPPEQVDYVALSPVQVISVATSLIPFLEH
DDANRALMGSNMQRQAVPLLRPERALVGTGLETQVARDSGMVPISRVNGTVTYVDANAIV
VQDEDGNDHTHFLQKYQRSNQDTCLNQRPIVRCGDPVIVGQVMADGSACEGGEIALGQNV
LIAYMPWEGYNYEDALLVSERLVTDDLYTSVHIEKYEIEARQTKLGPEEITREIPNVAEE
SLGNLDEMGIIRVGAFVESGDILVGKVTPKGESDQPPEEKLLRAIFGEKARDVRDNSLRV
PGTERGRVVDVRIYTREQGDELPPGANMVVRVYVAQRRKIQVGDKMAGRHGNKGIISRIL
PREDMPYLPDGTPVDIVLNPLGVPSRMNVGQVFELLMGWAASNLDCRVRIVPFDEMHGAE
KSQQTVETFLKEAAKQPGKGWVYDPEDPGKLQLRDGRTGLPFDQPVAVGYSHFLKLVHLV
DDKIHARSTGPYSLVTQQPLGGKAQQGGQRLGEMEVWALEAYGAAYTLQELLTVKSDDMQ
GRNEALNAIVKGKPIPRPGTPESFKVLMRELQSLGLDIAVYTDEGKEVDLMQDVNPRRST
PSRPTYESLGVADYDED
NT seq
3294 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcagcgcgattcaggtcgccaagaccgccacctacctccctgatctggtggag
gtgcagcgggccagctttaagtggtttttggatcaaggtctgatcgaggagctggaaagc
ttctctccgatcacggattacaccggcaagcttgagctccacttcatcggtagcgagtac
cgcctgaagcgcccccgccacgatgtggaagaggccaagcgccgtgatgcgaccttcgcg
tcacagatgtatgtgacctgccgtctggtcaataaggagaccggtgagatcaaggagcag
gaggtcttcatcggcgaactgccgttgatgaccgagcgcggcacgttcatcatcaacggc
gctgagcgcgtgatcgtgaatcagatcgtgcgtagccccggtgtctatttcaaggatgaa
atggacaagaacggccggcgcacctacaacgccagcgtcattcccaaccggggtgcatgg
ctgaagtttgagacggataagaacgacttgctccacgttcgtgtggacaagacccgcaag
atcaacgcgcacgtgctcatgcgtgccatgggtctgtccgacaacgacgtgctcgacaag
ctgcgtcatcccgagttttacaagaagtcgattgatgccgcgaacgacgagggcatcagt
tcggaagaccaggcgctgcttgagctctacaagaaactgcgcccgggtgaacccccctca
gtgagtggtggtcagcagctgctgcagacccgtttcttcgatcccaagcgctacgacctc
ggtcgggtcggccgctacaagatcaacaagaagctgcgtctcaccatccccgacacggtg
cgcaccctcacccatgaggacgtgctctccaccctcgattacctgatcaacctggaactg
gatgtcggtggtgccagcctcgatgacatcgaccacctcggcaaccgccgcgtgcgttcc
gtgggcgaactcctgcagaaccaggttcgggtgggtctgaaccgtcttgagcggatcatc
aaggaacggatgaccgtcggcgaaaccgattcgctgacccctgcccagttggtgaacccc
aagcccctggtggcggcgatcaaggagttcttcggctccagccagctgagccagttcatg
gaccagaccaaccctctggctgagctcacccacaagcgccgcatctcggcccttggaccc
ggtggtctcacccgtgagcgtgccggcttcgccgtccgcgacattcacccctcccactac
ggccgtctctgcccgattgagacgccggaaggccccaacgccggtctgatcaactccctg
gccacccacgcccgggtcaacgagtacggcttcatcgaaacgccgttctggaaggtggag
aacggtgtcgttctgaaggacggcgatccgatctacctgtctgccgaccgggaagacgaa
gtgcgcgtcgcccctggcgacgtggccactgaggacgacggccggatctcggcggatctg
attcctgttcgttatcgccaggacttcgagaaggtcccccctgagcaggtcgactacgtc
gccctgtcaccggtgcaggtgatctccgtggcaacgtccctgatccccttcctggagcac
gacgacgccaaccgcgccctgatgggctccaacatgcagcgtcaggctgtgccgttgctg
cgtcctgagcgtgccctggtgggtaccggcctggaaacccaggtggcccgcgactccgga
atggtgccgatctcccgggtgaatggcaccgtcacctatgtggatgccaacgccatcgtt
gtccaggacgaagacggcaacgaccacacccacttcctgcagaagtatcagcgctccaac
caggacacctgcctgaaccagcgcccgatcgttcgctgtggcgatccggtgatcgtcggt
caggtgatggcggatggctcggcctgtgaaggcggtgagatcgccctgggtcagaacgtt
ctgatcgcttacatgccctgggagggttacaactacgaggacgcgctgctggtcagcgag
cgtctggtcaccgacgacctctacacctcggttcacatcgagaagtacgagatcgaagcg
cgtcagaccaagctcggacctgaggagatcacccgtgagatccctaacgtcgccgaggaa
agcctgggcaacctcgacgagatgggcatcatccgcgtgggcgctttcgtggaaagcggc
gacatcctcgtgggcaaggtaacgcccaagggtgaatccgatcagccgccggaagagaag
ctgctgcgcgcgatcttcggtgagaaagcccgtgatgtgcgcgacaactccctacgggtg
ccaggcaccgagcgtggccgcgttgtggatgtgcgcatctacacccgagaacagggtgat
gagctgccccccggcgccaacatggtggtgcgtgtttatgtggcccagcgccgcaagatc
caggtcggcgacaagatggctggccgccacggcaacaagggcatcatcagccgcatcctt
ccccgggaggacatgccctatctgcccgacggcactccggtcgacatcgtgctcaacccc
ctgggtgtgccgagccggatgaatgtgggtcaggtgttcgagctgctcatgggttgggca
gcgtctaacctcgattgccgcgtgcgcatcgttcccttcgatgagatgcacggtgctgag
aagtcccagcagaccgtcgagaccttcctcaaggaagccgccaagcagcccggcaagggt
tgggtgtacgaccctgaggatcccggcaagttgcagctgcgggacggccgcaccggtctc
cctttcgatcagcccgtggccgtgggttactcccacttcctcaagctggttcacctggtg
gacgacaagattcatgcccgttccaccggcccctactccttggtcacccagcagcccctg
ggcggtaaggcacagcaaggcggtcagcgtctgggtgagatggaggtgtgggccctcgag
gcctatggcgccgcatacaccctgcaggaactgctcacggtcaagtccgacgacatgcag
ggccgcaacgaggccctcaacgccatcgtcaagggcaagccgatcccacgtcctggtaca
ccggaatccttcaaggtgctgatgcgcgagcttcagtccctggggctcgacattgccgtt
tacaccgacgaaggcaaggaagtggatctcatgcaggacgtgaacccacgtcgcagcacc
cccagcaggcccacctacgaatccctcggcgtcgcggattacgacgaggactga
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