Synechococcus sp. KORDI-52: KR52_07960
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Entry
KR52_07960 CDS
T03346
Name
(GenBank) ATPase AAA
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
synd
Synechococcus sp. KORDI-52
Pathway
synd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
synd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
KR52_07960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
synd03400
]
KR52_07960
Enzymes [BR:
synd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
KR52_07960
DNA repair and recombination proteins [BR:
synd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
KR52_07960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AII49074
UniProt:
A0A076HND4
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All DBs
Position
1481806..1485414
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AA seq
1202 aa
AA seq
DB search
MAQRFDANTYPLDPGVRLLEASAGTGKTFALAHLCLRLITEADHALEALLVVTFTDAAAE
ELRSRIGQRLQQALQGLEQLDQGMETSAPDPVLADWLGGSEPGEARQRWIRHLLVALEQL
DRADITTIHGFCRRSLRRLALSNAAAMEPQLDTDATALQAEVVQDLWQQELLSLPPDQFK
ALRQRGLSPQTLRRGLAQLDGEQQPWFRGADGAIDLDQPLAPQLEHWLAQLWHDFVPLWQ
RDHAALDAGFRQAAEQWKAQGCGATTPYSAKPKSDRCAQINQWLDGQTSVPSLLEIAARE
KPLKEYFHPGSWCKVARKCGETDPSLVTPALQAAVAALWDAPIERTWQYLLERGLQELDR
RRRRRGVITFGGLLASMDPGDGDVAWLAPLQQRYRAVMVDEFQDTDPVQWRLLQRAFGAG
ERHLLLMVGDPKQAIYRFRGGDLATYMAARDQVERIDHLLDNFRTTAPLMEGLNRLMAPG
LPRSELPVPAVQPRSSATPPQDAPALQLLLLSTEAPSSRSALEAELPQRLAAMVLEQLQQ
REDLTPADLCVLVSRHQQAEDLRRALGVCGLPTRLVTQGDVLDSEAALLLQWFLDALAEP
GDDARLRLLACSGLMNIAPDALEPGRLDQLALQLRGWADEIPRLGLLGALADLLKGEQMA
GLSERGRMLGDLQQAARLVQEAMHRQGLDVATAADWLRRERLHPSQPVPEARQPHSDQAD
SAIAVVTVHRSKGLEYPVVICPYLWQSPPAVAGPLWRDPRSGECLARVDVHWGEGWQAAQ
QAQQDAAAEAERLAYVAVTRAQTQLILIWARANGQEDSPLPAWLFGAEAAGDAIDSLTDE
RLSQALAERQVPISIDGLVESLPSGRRWRPPLLAEPLALGSIPKRIDRSWGRASYSAWIA
SSDDVQLHEQGRDRDPGAEESILVGAEPAWSETGPLAAFPRGAGAGDCLHRILEQFPFSE
AEAAEPRQRLELIAAELRRAGLDPDLQNDVLTGLEQVLQTPLGGPLGALSLDRLGPHQRL
PELSFDLPVQHVRTADLVAAFGCDAEARFGRTYSPALASLAINSRGFLTGSIDLVFQDPQ
HQRWWVLDWKSNWIGERRTSTELGLCGPHHYSQEAMEEQMLHHHYPLQAHLYLVALHRHL
RWRLPDYNPQQHLGGYVYCFLRGMPGALAASPEGAVGPGRIVEPVPLHRIAALDRALGEV
PA
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
atggctcagcgcttcgatgccaacacctatcccctcgaccctggggtccgcctgcttgag
gccagcgctggcaccggaaaaacctttgccctggcgcatctctgtctgcggctgattacg
gaggccgaccacgccctcgaggcgttgttggtggtgaccttcaccgatgcggcggctgaa
gagctgcgctcacgcatcggccagcggctgcaacaggcgttgcagggcctcgagcagctt
gaccaggggatggagacttctgctccggaccccgtcctggcggactggctggggggttcc
gagccaggggaggcgcgtcagcggtggattcggcacctgctggtggccctcgagcagttg
gaccgggccgacatcaccaccatccatggcttctgtcgccgcagcttgcgccgtctggcc
ctcagcaacgctgcggcgatggagccccagctggacaccgacgccaccgcgctccaagcc
gaggtggtgcaggacctctggcaacaggagctgctcagcctgccgccggatcagttcaag
gcgttgcgtcaacgcggcctctcgccccagaccctgcgcagggggttggcgcaactcgat
ggcgaacagcagccgtggttcaggggcgctgatggggcgatcgatctggaccagcccctc
gccccgcagctggagcactggctggcgcagctctggcacgacttcgtgccgctctggcag
cgggatcatgccgctctggatgccgggttccgtcaggcggccgagcagtggaaagcccag
ggctgtggagccaccaccccttattccgccaagcccaagagcgatcgctgcgcccagatc
aaccagtggctggatgggcagacctcagtgccatcgctgctggagattgccgcccgtgag
aagccgctgaaggagtacttccaccccggcagttggtgcaaggtcgcgcgcaagtgcggt
gagaccgaccccagcctggtgacgccggctcttcaggccgccgttgcggcgctctgggat
gcaccgattgagcgcacctggcaatacctcctggaacggggcttgcaggagctggaccgc
cgccgtcgccgccgcggggtgatcaccttcggcggcttgctggcctctatggatcccggc
gatggcgatgttgcctggcttgcccctctgcaacagcgctaccgggctgtgatggtggat
gagtttcaggacacagaccccgtgcagtggcgcctgttgcagcgcgccttcggtgctggt
gaacgccacctgctgctgatggtcggggaccccaagcaggcgatctaccgcttccgtggt
ggtgatctggctacctacatggcagcgcgggatcaggtggagcggatcgatcacctgctc
gacaacttccgcacaacggcaccgctgatggaggggttgaaccgcttgatggctccgggt
ctcccccgatctgaactgccggtgcccgcggtgcagcctcgcagctccgccaccccaccg
caggatgccccggcgttgcaactgctgctgctgtccacagaggcgccctccagccgcagt
gccctggaggcagagctgccccagcggctcgccgcgatggtgctggagcaactgcaacaa
cgggaggacctcacccccgcagatctctgcgtgctggtgagtcgtcatcaacaggcggaa
gaccttcgccgcgcccttggggtctgcggactccccacccgcctggtgacccagggggat
gtgctcgacagtgaagccgccttgctgttgcagtggttcctcgatgccctggcggaaccg
ggtgatgacgctcgcctgcgcctgctggcctgctcgggactgatgaacattgcgcccgat
gccctggagccggggcggttggatcagctggcgctgcagttgcgcggttgggctgatgag
attccgcggctgggcctgctcggggcgctggccgatctgctcaagggcgaacagatggcg
gggctgtcggaacggggccgaatgctgggggatctgcagcaggcggcgcggctggtgcag
gaggcgatgcaccgtcaggggcttgatgtggccactgcggcggattggttgcggcgggag
cggttgcaccccagccagccggtgccggaggctcgtcagccccacagcgatcaggccgac
agcgccatcgccgtggtcaccgtgcaccgcagcaagggtctggaatatccggtggtgatc
tgcccctacctctggcagtcgcccccagccgtggccggcccgctctggcgtgacccccgc
tcaggagagtgtctggcgcgggtggatgtccactggggggagggctggcaggcggcgcaa
caggcgcagcaggacgctgcggccgaggccgagcggctggcttatgtcgcggtgacccga
gcccaaacccagttgatcctgatctgggccagggccaacggccaggaggattccccgttg
cctgcctggttgttcggtgctgaggccgctggggatgcgatcgatagcctcaccgatgag
cggctgagccaagccctggcggagcgacaggttccgatcagcatcgatggcctggtcgag
agcctgcccagcggcaggcgttggcggcccccgctgctggctgagcccttggcccttggt
tccatccccaagcggatcgaccggagttggggccgggccagttactcggcctggattgcc
tcatccgacgacgttcagctgcatgaacagggtcgcgatcgcgatcccggcgctgaggaa
tcgatcctggtcggggcagaaccggcatggtccgagacagggccgctggcggctttcccg
cgcggggccggggccggggactgtctgcaccggatcctcgaacagttccccttttctgag
gcggaggccgctgagccccgccaacggctcgagctgatcgccgccgagttgcgccgggcc
ggacttgatcccgatcttcagaacgatgtgttgaccgggttggagcaggtgttgcagacg
cccctggggggaccgctgggtgcattgtcgctggatcggctggggccgcaccagcgcctg
cctgaactcagttttgacttaccagtgcagcatgtgcgcacggccgatctggtggccgcc
ttcggttgtgatgccgaggcccgtttcggccgcacctacagcccggcgctggcgtcgctc
gcgatcaacagtcgcgggtttctcaccggttccatcgatctggtgttccaggacccccag
caccaacgctggtgggttctcgactggaagagcaactggatcggtgaacggcgcaccagt
actgagctgggactctgcggaccgcatcactactcccaggaggcgatggaggagcagatg
ttgcaccaccactaccccctgcaggcccacctctacctggtggccctgcaccgccatctg
cgttggcggctgccggattacaacccgcagcagcatctggggggctacgtctactgcttc
ctgcgggggatgcctggagcgttggctgcttctccagaaggtgctgtcggaccggggcgc
atcgttgaacccgtgcccctccatcgcatcgcagccctggatcgagctctgggggaggtg
ccggcgtga
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