Synechococcus sp. KORDI-52: KR52_07975
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Entry
KR52_07975 CDS
T03346
Name
(GenBank) cold-shock protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
synd
Synechococcus sp. KORDI-52
Pathway
synd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
synd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KR52_07975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
synd03019
]
KR52_07975
03009 Ribosome biogenesis [BR:
synd03009
]
KR52_07975
Enzymes [BR:
synd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KR52_07975
Messenger RNA biogenesis [BR:
synd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KR52_07975
Ribosome biogenesis [BR:
synd03009
]
Prokaryotic type
rRNA helicases
KR52_07975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
B12-binding
CMS1
AAA_22
Cas3-like_C_2
DEDD_Tnp_IS110
Motif
Other DBs
NCBI-ProteinID:
AII49077
LinkDB
All DBs
Position
1487409..1489232
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AA seq
607 aa
AA seq
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MSLISEINQAKPPFMTEQQQQRDDSSCAVDLSASALPESNPNAEVFTTTITSAEPESGFA
GFGFSEALLRTLADKGYSEPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLERLE
SGQKTPQALVLAPTRELAMQVAESFKAYSAGHPHLKVLAVYGGTDFRSQISALRRGVDVV
VGTPGRVMDHMRQGTLDTSGLRSLVLDEADEMLRMGFIDDVEWILDQLPEQRQVVLFSAT
MPPEIRRLSKRYLKDPAEVTIRTKDQEGKRIRQRSITVPMPHKLEALQRVLDACGGEGVI
IFARTKAITLTVAETLEAAGHQVAVLNGDVPQNQRERTVERLRSGSVDILVATDVAARGL
DVERIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAVLFVTPRERRFIRNLERATGQPIE
AMEVPGNTAINQGRLDRLRKRLSDAAQAQRPDADEAALLQELMQRVATELELSPEQLAMA
ALNLAIGPDALLRKGDDDWIQNTRRNDRDRDRHSGDRRERRERPARAPEENMQRYRVEVG
HRDRVKPGNLVGAIAGETGLQGRMIGRIQIFDNHSLVDLPKGMPEDVFNSLRRLRVMNRE
LQIRQAS
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
gtgagcctgatttcagagatcaatcaggcgaagccacctttcatgactgaacagcaacag
cagcgcgacgattcctcctgcgcagtggatctttctgcatccgcgcttccggaatccaac
ccgaatgctgaggtgttcaccaccaccatcacatcggccgagccggaatccggtttcgcc
ggcttcggtttcagtgaggccctgctccgcaccctggccgacaaggggtacagcgaacca
tctcccattcagaaggcggccttccccgagctgatgctcggccgcgatctggtgggtcag
gcccagaccggcaccggcaaaacagcagcgtttgcgttgccgttgctcgagcgtctcgag
agcggccagaagacaccccaggccctggttctcgcccccacacgggagctggcgatgcag
gtggccgagtcgttcaaggcctattccgccggccatccccacctgaaggtgttggctgtc
tacggaggcacagatttccgctctcagatcagtgccctcaggcgcggggttgatgtggtg
gtgggcacccccggacgggtgatggaccacatgcgtcagggcacgctcgacaccagcggt
ctgcgcagcctggtgctcgatgaagcggacgaaatgctccgcatgggcttcatcgacgat
gtggagtggatcctcgatcagcttcctgagcagcgccaggtggttctgttctccgcgacg
atgcctcctgagatccgtcgcctgtccaagcgttatctcaaggacccggctgaggtcacg
atccgcaccaaggatcaggaaggcaaacggatccgccagcgttcgatcacggtgccgatg
ccgcacaagctcgaggccctgcaacgggtccttgacgcctgtggtggtgagggcgtgatc
atctttgcccgcaccaaggcaatcaccctgaccgtggccgaaacccttgaggccgctggc
catcaggtggcggtgctcaatggcgacgttccccagaaccaacgggaacgcaccgtggag
cgtctgcgcagtggatcggtcgacatcctcgtggccaccgacgttgcagcgcggggtctc
gatgtggagcgcatcggcctggtgatcaactacgacatgccgttcgacagcgaggcctac
gtgcaccgcatcggccggacgggtcgggctggacgcaccggcgaagcggttctgttcgtg
actccacgggaacgacgcttcattcgcaacctcgagcgggccaccggtcagccgatcgaa
gcgatggaggtgcccggcaacacagccatcaaccagggacgtctggacaggctgcgcaag
cgcttgagtgatgcggcccaggcgcaacgacctgatgccgatgaagcagccctgctgcag
gagttgatgcagcgggtggccacggagctcgagctcagccccgagcagctcgccatggct
gcactcaacctggccatcggacccgatgctctgctgcgaaagggcgacgatgactggatt
cagaacacccgtcgcaacgatcgcgaccgcgatcgccattcaggagaccgccgtgagcgg
cgcgagcgtcctgcacgggcccctgaggagaacatgcagcgctaccgcgttgaggtgggt
caccgcgatcgcgtcaagccgggcaacctggtgggcgccatcgccggcgagaccggtctg
cagggccggatgatcggccgcatccagatcttcgacaatcacagccttgtggatttgccc
aagggcatgcccgaggatgtgttcaacagccttcgacgactgcgcgtgatgaaccgcgaa
cttcaaatcaggcaggcctcctga
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