Synechococcus sp. KORDI-52: KR52_14450
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Entry
KR52_14450 CDS
T03346
Name
(GenBank) helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
synd
Synechococcus sp. KORDI-52
Pathway
synd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
synd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KR52_14450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
synd03019
]
KR52_14450
03400 DNA repair and recombination proteins [BR:
synd03400
]
KR52_14450
Enzymes [BR:
synd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KR52_14450
Messenger RNA biogenesis [BR:
synd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KR52_14450
DNA repair and recombination proteins [BR:
synd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
KR52_14450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
Motif
Other DBs
NCBI-ProteinID:
AII50318
LinkDB
All DBs
Position
complement(2560546..2561958)
Genome browser
AA seq
470 aa
AA seq
DB search
MVDAVLAGRDALAVLPTGGGKSLCYQLPALVCEGLVVVISPLVALMEDQVMALQRRGIAA
ACLHAGLDPARRQQALEQLRNATLRLLYIAPERLQGGQTRLMLERHATEGRLVALAVDEA
HCISAWGHDFRPDYRRLGQIRSLCPGVPMLALSATAAPRVRADIIRLLDLRRPLVQVSSA
RRDNLRYTMQRRPRDPMPQVLEALEMSRGAALIYARTRRSVEQWAERLSDQGVAATAYHA
GLDPETRQQALKLFLEHERPVLVATVAFGMGVDRGDVGLVLHLDLPATPEGYLQESGRAG
RDGKPAHCQVLFSPGDRTSLGWAMQASARGRDALEDRRRLDLAQQQLRRMEAVAEGEMCR
EQALLLAVGELVGPCGRCDRCVESPKRRDWSAQVETLLAHLAEQDGTEMRRLGEHLALHE
PGRHDRWTWLARRLVQEELIQESNDGAQRLYLRESGRRFLDCPWPLDYAS
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
gtggtggatgccgtgctggctggccgggacgcgctggcggtgctgcccaccggtggaggc
aaatcgctctgctatcagcttccggccctggtgtgcgagggcctggtggttgtgatttca
ccgttggtggcgctgatggaggaccaggtgatggctctgcagcgacggggaatcgctgcg
gcctgcctgcatgcaggtctggatccagcccgacgccaacaggccctggagcagctgcgg
aacgccacgctgcgactgctttacatcgcgccggaacgactccagggtgggcagacccgg
ctgatgctggaacgtcatgccacggaggggcgactggtggccctggcggtggatgaagcc
cattgcatcagtgcctgggggcatgacttccgacccgattaccgccgcctcggtcagatc
cgcagcctctgcccgggagtgccgatgctggccctcagcgcgacggccgccccacgggta
cgggccgacatcattcgcctgctggatctgcgtcgcccgctcgtgcaggtgagctcggcc
cgccgggacaaccttcgttacacgatgcagcggcgccccagggatcccatgccgcaggtg
ttggaggcactggagatgtcccgtggcgctgcgctgatctatgcccgcacccgtcgttcc
gtggagcagtgggcggagcgcctcagtgaccaaggggttgccgcaacggcttaccacgcc
ggcctggatccggagacccgccagcaggctctgaagctgttcctcgagcacgagcgacct
gtcctggtggcgacggtggccttcggcatgggcgttgaccgtggcgatgtgggcctggtg
cttcatctcgatctgccggccacgcctgagggctatctgcaggaatcgggccgagccggt
cgagacggcaagccggcccattgccaggtgctgttttcgccgggtgatcgcaccagcctg
ggctgggccatgcaggcctcggctcggggcagggacgccctggaggaccgtcgccgcctg
gacctggcccagcagcagctgaggcgcatggaggccgtcgctgagggggagatgtgccgt
gaacaggcgttgctgctggcggttggcgagttggtgggtccctgtggtcgctgcgatcgc
tgcgtggagtcccccaaacgacgcgactggtcagcccaggtggaaacgcttttggcccat
ctcgcggagcaggacggcacggagatgcgccgcctcggagagcacctggctctgcatgaa
cccggccgccacgaccgctggacctggctggcgcgtcgtctcgttcaggaggagttgatc
caggaaagcaacgacggtgctcagcggctttatctccgagaaagcggccggagattcctg
gattgcccctggccgctcgattacgcctcctga
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