Synechococcus sp. PCC 6312: Syn6312_0294
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Entry
Syn6312_0294 CDS
T02370
Name
(GenBank) ATP-dependent DNA helicase, Rep family
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
syne
Synechococcus sp. PCC 6312
Pathway
syne03420
Nucleotide excision repair
syne03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
syne00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Syn6312_0294
03430 Mismatch repair
Syn6312_0294
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
syne03400
]
Syn6312_0294
Enzymes [BR:
syne01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Syn6312_0294
DNA repair and recombination proteins [BR:
syne03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Syn6312_0294
MMR (mismatch excision repair)
Other MMR factors
Syn6312_0294
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
DEAD
ResIII
PcrA_UvrD_tudor
AAA_11
Viral_helicase1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AFY59531
LinkDB
All DBs
Position
301561..303915
Genome browser
AA seq
784 aa
AA seq
DB search
MSRDFLAGLNPSQRQAVQHFCGPLLVVAGAGSGKTRTLTFRIAHLVQEHRINPENILAVT
FTNKAAKEMKERIEKLFAQQAALEKYNRAWDDLGDVEQKRVRSQVYRSLIKPLWVGTFHS
LCARILRLEIEKYQDSQGRKWQRNFTIFDESDVQSLIKEIITVKLNLDDKKFDPRSVRYK
ISNAKNQGLTPAELEQQQSGYQGRVIAEVYNHYQEHLAANNALDFDDLIWVLVQLFQQNE
QVLAYWHQQFGHILVDEYQDTNRTQYDLIRLLVTNGESTETFNSWQNRSVFVVGDVDQSI
YSFRCADFTILMNFQQDFGDGLPDDDTRTMVKLEENYRSVANIITAANALIENNTERIDK
VLKATRPEGEAIFCHQAEDEIQEAEFVTQQIYHLGSRCLEPNWGQFAVLYRTNAQSRPIE
EALVRARIPYTVVGGLRFYDRKEIKDVLAYLRLLINPSDTVGLKRIINVPRRSIGKTTLD
RLSQAAQELNMPLWELLVDKTSVQTLAGRASKAIIDFVGMIQTLQALVPQKKASEMVQLV
IEQSGYRRDLENQGTDEALDRLQNISELVSAALQFEEEGDETGLEAFLASAALASDLDNL
EEGQSAVSLMTLHSSKGLEFPTVFLVGLEQGLFPNHRSLNDPLALEEERRLCYVGVTRAQ
EQLFLCQAQERRLYGQRESTIPSQFLSELPAELLTGSVRKLRRTTPGPKTINLKAAPKGI
PVPSRSSFPQPWTVGQTIIHPAFGEGQVTHIFGSGPKLSLAIRFPGLGQKVIDPQVTRLQ
VRES
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgtgactttcttgctggtcttaacccctcccaacgccaggccgtgcagcatttt
tgtgggccgttgttggtggtggctggggctggctctgggaaaacccgcaccttgaccttt
cggattgcccatttagttcaagaacatcggattaacccagaaaatattttggcagtcacc
tttaccaacaaggccgccaaagaaatgaaagagcgaattgaaaagctctttgctcagcaa
gctgccttagaaaaatacaaccgggcctgggatgatttgggggatgttgagcaaaaacgg
gtgcgctcccaagtctatcggagtttaattaagcccctttgggttggaacctttcacagt
ttatgtgctcggattttacgtttggaaattgagaaatatcaggatagtcaagggcggaaa
tggcaacggaattttacgatttttgatgagtccgatgtccagagtctgattaaggaaatt
attacggttaaactcaatctggatgataagaaatttgatccccgctcagtccgctacaaa
attagtaatgccaaaaatcaaggtttgacccccgcagaactggaacagcaacaatctggc
taccaggggcgggtcattgccgaagtttacaatcattatcaagagcatttggcagccaac
aatgccctggattttgatgatttgatttgggttttagtccagctatttcaacaaaatgaa
caggttctagcctattggcaccaacagtttggtcatattttagtggatgaatatcaagat
acgaaccgcacccaatatgatttaattcgactcttagtcaccaatggcgaatctaccgaa
acgtttaatagttggcaaaatcgttcggtgtttgtggtgggggatgtggatcagtccatt
tattcctttcgttgtgctgattttacaatcctgatgaacttccagcaggactttggcgat
ggcttgcccgatgatgacacccgcacgatggtgaaactggaggaaaactatcgctccgtt
gccaatattattactgccgccaatgccctaattgaaaacaacacggaacggattgataaa
gtcctgaaagccacccgtccagagggagaagcgattttctgtcaccaggccgaggatgaa
attcaggaggcggaatttgttacccaacagatttatcacctagggagccgctgccttgaa
cctaactggggacaatttgctgtcctctaccgcaccaatgcccagtcccgcccgattgaa
gaagccctagtccgggcccggattccctataccgttgtgggcggcttaagattttatgac
cgcaaagaaattaaagatgttcttgcttatctacggctactgattaaccctagtgatacg
gttggcctgaaacgaattatcaatgttccccgccgcagtattggcaaaaccaccctagac
cgcctcagtcaggccgcccaggaattgaatatgcccctgtgggagttactggtagataaa
acctcagtacaaacgctagcggggcgggccagtaaagcgattatagattttgtcgggatg
attcaaactctccaggccctagtgccccagaaaaaagcctcagaaatggtgcaactggtg
attgagcaatcgggctatcgccgagatttagaaaaccaagggactgatgaagccttagac
cgcctccaaaacatctcagaactggtcagtgctgccttgcaatttgaggaagaaggagat
gaaacgggcctggaagcgtttttagcgagtgcagctcttgcttctgacttggacaatctt
gaggaaggacaatcggctgtttccctcatgacgctccattcctcgaagggactggaattt
ccaactgtgtttttagttggcctggagcaggggctatttcccaatcatcgctctctcaat
gaccctttggccctagaggaagaacggcggctgtgctatgtcggagttacccgggcccaa
gaacaactcttcctttgccaggcccaggaacgtcggctttacggtcaacgggaatccacc
attccgtcccaattcctgagtgagttacccgccgagttgttgacaggttcggttcgcaaa
ctccgccgcacaacacctggcccaaaaaccataaaccttaaagccgcccccaaagggata
cccgttcctagtcgctcaagtttcccccaaccttggacagtcggtcaaaccattattcat
cccgcctttggggagggacaagtgacccatatttttggttccggccccaagttatcctta
gcgattcgcttccccggtctggggcagaaggtcattgatccgcaagtcactcgattacag
gttagagaatcctag
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