Synechococcus sp. PCC 6312: Syn6312_0571
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Entry
Syn6312_0571 CDS
T02370
Name
(GenBank) exoribonuclease R
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
syne
Synechococcus sp. PCC 6312
Brite
KEGG Orthology (KO) [BR:
syne00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
syne03016
]
Syn6312_0571
Enzymes [BR:
syne01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Syn6312_0571
Transfer RNA biogenesis [BR:
syne03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Syn6312_0571
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD_RNase_II
WHD_RNase_II
HTH_RNase_II
SAT
RNase_II_C_S1
KhtT_N
Motif
Other DBs
NCBI-ProteinID:
AFY59793
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Position
571030..573042
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AA seq
670 aa
AA seq
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MEKGTLVEFRVNNQRRLGVVERPEGKKHWIVIDSNHQAHTLHPRQITYTVTGERYQTQEI
PQFQKAVEPFLDPESLEVAWEILLEENRAVSPESLALLLFSGQTPLQCYAAHYLLSEDKI
YFKQKAELYEARPTSQVAEIKHQLEKERQRQQTKAQFLAKLNQALAQETISWEPAERNKF
EPLERFAALGDLATQSQINAASELLTQLKRPTTALAAFQLLVDLSLWKHHENLALHRSQI
PTAFKPEVVDMARHCISNPPPDLDAPIRQDLTHLKVYTIDDESTQEIDDGISLETLPNGQ
ERLWIHIADPSRWLLLGDGLEQEARRRATTVYLPTGMIPMFPPELATGPMSLVAGKTCCA
LSFGIILQPDGSIADYQICPSLIKPTYRLTYEDVDMMLELAVQNEPELLGIGAWMQKRLA
WRQQQGAIQINMPEPEIKVVDDEVDIHPLADSVARQLVAEMMILTGEVAARFGEAQNIPL
PFRSQTQPELPPEEELQQLPPGPVRQCAIRRCMPKSEMSPTPNRHASLGLNAYCQVTSPI
RRYSDLIAHMQIKAHLRGDNVPFAAPDLGELLLGVVAAVQETILVERQTTRYWCLEFLRR
HSDQVWQALMLRWLREDDLLALVLLEDLGVELAVRFHRVVGLGETLNLRVSRVDPRADQI
ALEEVILAHT
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
gtggaaaagggcactttagttgaatttcgggtcaataatcagcggcggctgggagtggtt
gagcgacccgaagggaaaaagcactggatcgtcattgatagcaatcaccaggcccacacg
cttcatccccggcaaattacctataccgtcacgggtgagcgttaccagacccaggaaatt
ccccaattccaaaaagcagttgaaccattcctggatccggagagccttgaggtggcctgg
gaaattctcttagaagaaaatcgggccgttagtcctgaaagtctggccctgctcttattc
tctggacaaaccccactccaatgttacgccgcccattatctactttctgaagacaagatc
tatttcaaacaaaaggctgaactctacgaagcccgccccaccagccaagttgccgaaatt
aaacatcaactggaaaaagaacgacagcgtcaacagaccaaggcccaattcttagctaaa
cttaaccaggccctggcccaggaaactatcagttgggagccagcagagcggaataaattt
gaacctctggaacgatttgccgccttgggagacctggccactcagagccaaattaatgct
gcttctgaactcttaactcaacttaaacgcccaacgacggccctagctgcttttcaactc
ttggtagatttgtcactatggaagcaccatgagaatttagctctccatcggagtcagatt
ccgacagcatttaagccggaggtggtggacatggcccgacactgtattagtaatccgccc
ccagatctggatgcccccattcggcaagatctgacccatctcaaggtttatacgattgat
gacgaaagcacccaagaaattgatgatggcattagtttagaaaccctccctaatggccaa
gagcggctgtggattcatattgctgatccgagtcgctggttactgttaggcgatggcctg
gagcaggaagcccgccgccgcgctaccaccgtgtatttacccacaggcatgattcccatg
tttccccccgaacttgcgactgggccaatgagcttagtggcgggtaaaacctgttgcgcc
ttgagttttggcatcattttgcagccagatggtagtattgcggactatcaaatttgtccc
agcttgattaaacccacctatcgcctcacctatgaggatgtggacatgatgctggaattg
gctgtccaaaatgagccagagttgttaggcatcggggcctggatgcagaaacgcctggcc
tggcgacaacaacaaggggcgattcagatcaatatgccagaacccgagattaaagtcgtt
gatgatgaagtcgatattcaccccttagcggattctgtggcccgtcaattggtcgccgaa
atgatgatcctgactggggaagtcgccgctcgctttggtgaagctcagaatattccctta
ccctttcgctctcaaacccagcccgaactgcctcctgaagaagaattacaacaactcccc
cccggccctgttcgccaatgtgccatccgccgctgcatgcccaagagtgaaatgagtcca
accccgaatcgtcatgccagtctcggcttaaatgcctattgccaagtgacttccccaatt
cgccgctactctgatctcattgcccatatgcagattaaggcgcacctgagaggcgataat
gtcccgtttgcggcccctgacttaggggaactgttattgggggtggttgcggcagtgcag
gaaacaattttggtggagcggcaaacaacgcgctactggtgtttggaatttctccggcgg
cattcagatcaggtgtggcaagccttgatgttgcggtggctgcgggaagatgatttgctt
gccctggtgctactagaggacttgggcgttgaattagccgtgcggttccatcgggtcgtg
ggacttggagaaaccctcaatttacgggttagccgtgtcgatccccgtgccgatcagatt
gcccttgaagaagtaatcttagctcacacttaa
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