Synechococcus sp. PCC 6312: Syn6312_0932
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Entry
Syn6312_0932 CDS
T02370
Name
(GenBank) DNA/RNA helicase, superfamily I
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
syne
Synechococcus sp. PCC 6312
Pathway
syne03420
Nucleotide excision repair
syne03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
syne00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Syn6312_0932
03430 Mismatch repair
Syn6312_0932
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
syne03400
]
Syn6312_0932
Enzymes [BR:
syne01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Syn6312_0932
DNA repair and recombination proteins [BR:
syne03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Syn6312_0932
MMR (mismatch excision repair)
Other MMR factors
Syn6312_0932
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
UvrD_C_2
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AFY60134
UniProt:
K9RS72
LinkDB
All DBs
Position
916083..918401
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AA seq
772 aa
AA seq
DB search
MVNTLVTPVPSLGELELGLAKLRHTLRPGQRELANWLDGPLAVSAVPGAGKSHGMAIGAV
MTLAQAQLHRQKQLVIVTFTRSATANIKSRIRQHLNNLGLPRYGFSVQTLHGLALNIAAS
NIRHGLDLSQATLITDVQKSRILRRCAQEWQQDNPQAWQILLDGQATEYEETELIRRRTT
LLSEVLPKLAQTSIAAAKSSNLSPADLANLAAGHPDAYPILEIAADLYGRYQTHLSARGL
IDYDEMILAALRVLEDPESRSHWQTQVYGVFEDEAQDSTPLQTELLKILATDPLDPDLVN
LVRVGDPNQAINSTFTPADPIFFAQFCQACADQSRFFTMSQAGRSSQIIIDAANYLVAWA
NGTQVAGPELPFQPQKIELVSPADPQPDANPPATGRGLEIYAPRDVIHTVALIGARVGQL
LTENPQANAAVLVRENKQGRFVTDVLAQPEKFGLKTNLAGLGITVYDTGSEARRSHVPAE
LLNILLFLHRPHSPGYFKAALDIFTERQLIRRQDWNALVSQPELFLFPSPIDPGPQPDEQ
AAQQLCQNLLQARLNLALYPLIAYVANVLQYDPTELATADKLISQLAQQAGGQQTWTRIS
PIWQEIVSEEKFDAVELGDPDSNLIRPRQLTIMTMHKAKGLDWDYVFLPFLHDTVIPGNP
WVPGSLKFLGHANLEEVARAQIRSAVHQRPILDINGAWEQANQLKTAEAYRLLYVAMTRA
KRLLWMSAAINGPFSWASFNWHQSYKFDLKKPCPALDPLRKQFPQSQMSITY
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
atggtgaatacattagtcactcctgtgccgagtttaggggaattggagcttggcctggcc
aaactgcggcacactctccgaccggggcagcgggaattagcaaattggttagatggcccc
ttggctgtttcagcggttccgggagcgggaaaatcccacgggatggccattggagccgtg
atgaccttggcccaggcccaactccatcgtcaaaagcaactggtgattgtcacctttacc
cgctcggccacagcgaatattaagagtcgaattcgccagcatctcaataatttgggccta
cctcgctatggtttttcggtgcaaactctccatggtctagccctgaacattgctgctagt
aacatccgccacggcctggatttatcccaagcaactctgattactgatgtccagaaaagt
cggattttgcggcggtgtgcccaagagtggcagcaggataacccccaggcctggcagatc
ttattagatggccaagcgactgaatacgaggaaacagaactgatccgccgccggacgacc
cttttgagtgaagtcttacccaaactcgcccaaaccagtattgccgcggcaaaaagttct
aacctgagtccggcagatttggctaacctggccgccggccatcccgatgcctaccccatt
ttagaaattgccgccgacctctatggccgttatcaaacccatctcagcgcgcgcggactc
attgactatgatgaaatgattttagctgccttacgggtgctagaggatcccgagtcccgc
agccactggcaaactcaagtttatggggtttttgaagatgaagcccaggattccaccccc
ctgcaaacggaacttctcaaaatcctagccacagacccgcttgatcccgatctggtgaat
cttgtccgggtgggggatccaaaccaggccatcaactccacctttaccccggctgacccg
atcttctttgcccaattctgccaggcctgtgcggatcaatcccgattctttacgatgagc
caggccggtcgctctagtcagatcattattgacgccgcaaactatctcgtagcctgggcc
aatgggacacaagtggctgggccagaattgccgtttcaaccccagaaaattgagctagtt
tctcccgccgacccccaacccgatgccaatccacctgcgaccggccggggcctggaaatt
tacgcgcccagagatgtgatccatacggtggccttgattggggcacgggtgggacaactg
ctaacggaaaatccccaggccaatgccgctgtcttggtgcgggaaaataagcaggggcga
tttgtgaccgatgttctagcccagccggaaaagtttggcttaaaaaccaatttggcaggc
ctggggattacggtttacgacacaggcagcgaggcccggcgttcccatgttccggctgaa
ctgctgaatattctcctctttttgcatcgcccccattcccctggctatttcaaagcagcc
ctggatattttcactgaacgtcaactcatccgccgccaagattggaatgctctcgtcagt
caaccggaattatttttatttcccagtccaatcgatcctggcccccaacccgatgaacaa
gccgcccaacaactctgtcaaaatctcctccaggcccgtttgaacctagccctctatccc
ctgattgcctatgtggccaatgtgctccaatacgacccaaccgaactggccaccgctgat
aagttaattagccaattggcacaacaggccggcggacaacaaacttggaccagaattagc
ccaatttggcaggagattgtcagtgaagaaaaatttgatgcggtggagctaggggatccc
gacagtaacttgattcgaccacggcaattaacgattatgaccatgcacaaagccaagggc
ctggattgggattatgtctttctgccgtttttgcatgacaccgtcattccgggtaatcct
tgggttccgggttcgctcaagtttctcggtcatgccaacctagaggaagtggcgcgggcc
caaattcgcagtgccgttcaccaacgcccaattctagatattaacggggcctgggaacag
gctaatcagctcaaaaccgccgaagcctatcgtttactctatgtggcgatgacccgggcc
aaacgtttgttatggatgtcagcggcaatcaatggccccttcagttgggcaagttttaat
tggcatcaaagctataaattcgatctgaaaaaaccttgtcctgccctggatcccctccgc
aagcaatttccccaatcacaaatgtccattacctattag
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