Synechococcus sp. PCC 6312: Syn6312_1245
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Entry
Syn6312_1245 CDS
T02370
Name
(GenBank) DNA-directed RNA polymerase gamma chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
syne
Synechococcus sp. PCC 6312
Pathway
syne03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
syne00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Syn6312_1245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
syne03021
]
Syn6312_1245
03400 DNA repair and recombination proteins [BR:
syne03400
]
Syn6312_1245
Enzymes [BR:
syne01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Syn6312_1245
Transcription machinery [BR:
syne03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Syn6312_1245
DNA repair and recombination proteins [BR:
syne03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Syn6312_1245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
Cas9-BH
Motif
Other DBs
NCBI-ProteinID:
AFY60427
LinkDB
All DBs
Position
complement(1207830..1209695)
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AA seq
621 aa
AA seq
DB search
MPRLEQRFDYVKVALASPDRITKWGQRTLPNGQVVGEVTKPETINYRTLKPEMDGLFCER
IFGPAKDWECHCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGYIKLAAPVTHVWYLKGI
PSYMAILLDIPLRDVEQIVYFNSYVVLNPGNHDGLSYKQLLTEEQWQEIEEQIYSEDSQL
VDIEVGIGAEAIQRLLQDLDLPTEAEQLREEIAASKGQKRAKLIKRLRVIDNFIATGSRP
DWMVLEVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIVRN
EKRMLQEAVDALVDNGRRGRTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRSV
IVVGPKLKMHQCGLPREMAIELFQPFVIHRLIRQGIVNNIKAAKRLILRNDPVIWDVLED
VIDGHPVMLNRAPTLHRLGIQAFEPILVEGRAIQLHPLVCPAFNADFDGDQMAVHVPLSI
EAQAEARLLMLASNNILSPATGKPIVTPSQDMVLGCYYLTAENPKLVAEDRYFANFNDVV
MAYQEQQLDLHAYVWVRFDGPVEDGDRSQPEIVTQSDGTTLETYQLRKRRLDAAGNLITQ
YIRTTPGRIIYNQTIQESLAS
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgcctaggctggaacaacggtttgactatgtaaaagttgcccttgcctccccggatcgg
attaccaaatggggacaacggactttacccaatggccaggtggtcggggaagtcaccaag
cccgaaaccattaactaccgaactctcaagccagaaatggatggtttgttctgtgagcga
atttttggtccagccaaagattgggaatgtcactgtggcaaatataaacgggttcgccat
cggggtattgtctgtgaacggtgcggcgtagaagtgaccgaatcgcgggtgcggcggcat
cggatgggctatatcaagttggcggccccagtcacccatgtttggtatctcaaagggatt
ccaagctacatggcgattctgttggatattccactgcgggatgttgaacaaattgtttac
ttcaactcctatgtggttctcaacccaggtaatcacgatggcctaagctacaagcaactt
ctcacagaagagcagtggcaagaaatcgaggagcaaatttacagtgaagattcccaactc
gttgacattgaagtcgggattggggctgaggcgattcaacggctacttcaagacttggat
ttgcccaccgaagcggaacaactccgggaagaaattgcagcatccaaggggcaaaagcga
gctaagttgatcaagcgcttacgggtgattgataacttcattgccacaggcagtcggccg
gattggatggttttggaagtgattcctgttattcctccagacctacgcccaatggtgcaa
ctagatggcggccggtttgcgacctctgacttaaacgatctctatcggcgagtcatcaac
cgcaataaccgtttggcccgcttacaggaaatccttgcgcctgagattatcgtccgcaat
gaaaaacggatgctccaggaagctgttgatgcccttgtggataacggccgtcgtggtcgc
acagttgtcggtgctaataatcggcccttaaagtctctttcggacattatcgaagggaaa
caaggccgattccggcaaaaccttctgggtaaacgggtggactattcgggtcgttccgtg
attgtggttggccccaagctaaaaatgcaccaatgcggcttaccgcgggaaatggcgatt
gagttattccaacccttcgtgattcaccgtctgattcgccaagggattgtcaataatatc
aaagcagccaaacgcctgatcctgcggaatgatccggttatttgggacgtgctggaagat
gtgattgatgggcatcccgttatgctcaaccgggctccaaccttacaccgtttaggcatc
caggcctttgagccgatcctcgtcgaagggcgggcgattcaactacatcctctggtgtgt
ccagcctttaatgctgactttgatggggaccaaatggcagtacacgtgcccctctccatc
gaagcccaggccgaggcccggttgttgatgttggcttctaataacattctttctccagct
acaggtaaacccatcgttactcccagccaagatatggttttgggttgctattacctcacg
gccgaaaatccgaaactggtggcggaagatcgctactttgctaactttaatgacgtggtc
atggcctaccaggagcagcaactcgatctccatgcctatgtctgggttcgctttgacggg
ccggtggaggatggtgatcgctcccaaccagaaattgtgacgcaatccgatggcacaacc
ctagaaacctatcagctgcggaaacgccgtttagatgccgccggaaatctaattacccaa
tatattcggacaacccccggccgaattatttacaaccaaaccattcaagaaagccttgcc
agctaa
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