Synechococcus sp. PCC 6312: Syn6312_1261
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Entry
Syn6312_1261 CDS
T02370
Name
(GenBank) RNA polymerase sigma factor, cyanobacterial RpoD-like family
KO
K03086
RNA polymerase primary sigma factor
Organism
syne
Synechococcus sp. PCC 6312
Brite
KEGG Orthology (KO) [BR:
syne00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Syn6312_1261
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
syne03021
]
Syn6312_1261
Transcription machinery [BR:
syne03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Syn6312_1261
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
Sigma70_r4_2
PBP1_TM
UPF0154
Motif
Other DBs
NCBI-ProteinID:
AFY60443
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Position
1227235..1228383
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AA seq
382 aa
AA seq
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MTQATVLEATPAAEMALDALLIEADDELDEELDELEDDEASDDGEGKAGKAKGRRRATAK
KKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRDRISEQLDCDPDDLER
HPEPWASEVKMTLPAFRHRLFVGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGS
LGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKL
LSQEMGRKPTEEEIAERMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGET
PEDQVSKHLLREDLETVLCTLSPRERDVLKLRYGLDDGRMKTLEEIGQIFNVTRERIRQI
EAKALRKLRHPNRNSVLKEYIR
NT seq
1149 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggccactgtactcgaggcaaccccggcggccgaaatggcccttgatgcatta
ctcattgaggctgacgatgaactggatgaagagcttgatgagttagaagatgatgaagcc
tccgatgatggtgagggcaaagcgggtaaagctaagggacggcggcgggccacggccaag
aaaaaacactacaccgaagattccattcgtctgtacttgcaggaaattggccggattcgc
ctgctccgggctgatgaagaaattgaactggcgcgcaaaattgccgacttgctggaacta
gaacggattcgcgaccggattagtgagcaattggactgtgacccggacgatttagagcgt
caccccgaaccctgggctagtgaagtcaagatgacgttgcctgcatttcggcatcgctta
tttgtcgggcgacgggccaaagaaaaaatggtgcagtcgaacctccgacttgtggtctcc
atcgctaagaaatatatgaaccggggcctgtccttccaagatttgattcaagaagggagt
ttgggtttgattcgggcggctgaaaagtttgatcacgaaaaaggctataaattctcgacc
tatgccacttggtggatccgccaggccattacccgcgccattgccgatcagtcccggaca
atccgcctccccgttcacctttacgaaaccatttcccggatcaagaaaaccaccaaactc
ctctcccaggaaatgggacgcaaacctacagaggaggaaattgccgaacggatggaaatg
accatcgaaaaactgcggtttattgccaagtcggcccaactgcccatttccttagaaacc
cccatcggtaaagaagaagattctcgattgggggattttattgagtcggatggggaaacc
ccagaagatcaggtttccaaacatttgctccgggaagacttggaaacagttttatgtacc
ctcagccctcgcgagcgggatgttttgaaactgcgttatggcctggacgatgggcggatg
aaaactctcgaagaaattgggcaaatttttaatgtgacgcgggaacggattcgccaaatt
gaagcaaaggcccttcgtaaactccgccaccccaaccgcaatagtgttctgaaggaatac
atccgctag
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